Bi-Parental QTL | ||||||
---|---|---|---|---|---|---|
cqSeed oil | ||||||
QTL Name | LG (GmComposite2003) | Start (cM) | End (cM) | |||
cqSeed oil-001 | C1 | 89.72000 | 91.72 | |||
cqSeed oil-002 | H | 85.80000 | 87.80 | |||
cqSeed oil-003 | L | 30.58000 | 34.54 | |||
cqSeed oil-004 | I | 35.40000 | 37.40 | |||
cqSeed oil-005 | N | 35.77000 | 39.34 | |||
cqSeed oil-006 | C2 | 34.63000 | 36.55 | |||
cqSeed oil-007 | E | 16.13000 | 16.78 | |||
cqSeed oil-008 | A1 | 96.72000 | 102.05 | |||
cqSeed oil-009 | C2 | 34.63000 | 36.55 | |||
cqSeed oil-010 | E | 16.13000 | 16.78 | |||
cqSeed oil-011 | D1b | 117.48000 | 120.78 | |||
cqSeed oil-012 | A1 | 96.73000 | 102.05 | |||
cqSeed oil-013 | E | 38.78000 | 41.82 | |||
cqSeed oil-014 | D1b | 114.49000 | 118.94 | |||
cqSeed oil-015 | A1 | 96.73000 | 102.05 | |||
cqSeed oil-016 | C2 | 34.34000 | 51.84 | |||
mqSeed oil | ||||||
QTL Name | LG (GmComposite2003) | Start (cM) | End (cM) | |||
mqSeed oil-001 | A1 | 92.56000 | 94.20 | |||
mqSeed oil-002 | A1 | 28.08000 | 30.28 | |||
mqSeed oil-003 | A1 | 85.58000 | 91.24 | |||
mqSeed oil-004 | A2 | 67.32800 | 77.70 | |||
mqSeed oil-005 | B2 | 68.98000 | 78.66 | |||
mqSeed oil-006 | C1 | 5.36000 | 15.70 | |||
mqSeed oil-007 | C1 | 122.63000 | 123.79 | |||
mqSeed oil-009 | D1a | 56.40000 | 59.00 | |||
mqSeed oil-010 | D1a | 68.62000 | 72.30 | |||
mqSeed oil-011 | D2 | 75.29000 | 80.20 | |||
mqSeed oil-012 | E | 22.84000 | 28.30 | |||
mqSeed oil-013 | E | 28.27000 | 35.80 | |||
mqSeed oil-014 | E | 1.09000 | 3.04 | |||
mqSeed oil-015 | F | 16.08400 | 20.56 | |||
mqSeed oil-016 | G | 68.56000 | 73.40 | |||
mqSeed oil-017 | G | 94.40000 | 96.60 | |||
mqSeed oil-018 | H | 86.49000 | 90.30 | |||
mqSeed oil-019 | I | 30.56000 | 34.70 | |||
mqSeed oil-020 | I | 36.03000 | 49.30 | |||
mqSeed oil-021 | K | 97.13000 | 107.00 | |||
mqSeed oil-022 | L | 33.71000 | 36.10 | |||
mqSeed oil-023 | L | 90.34000 | 95.40 | |||
mqSeed oil-024 | N | 68.76000 | 77.10 | |||
mqSeed oil-025 | N | 92.56000 | 102.06 | |||
Seed oil | ||||||
QTL Name | LG (GmComposite2003) | Start (cM) | End (cM) | |||
Seed oil 1-1 | L3 | 31.10000 | 48.70 | |||
Seed oil 1-2 | L9 | 5.30000 | 31.60 | |||
Seed oil 2-1 | I | 28.00000 | 30.40 | |||
Seed oil 2-2 | I | 30.40000 | 38.95 | |||
Seed oil 2-3 | E | 8.55000 | 14.55 | |||
Seed oil 2-4 | E | 33.95000 | 37.65 | |||
Seed oil 2-5 | E | 0.00000 | 3.10 | |||
Seed oil 2-6 | P | 36.80000 | 43.70 | |||
Seed oil 2-7 | L | 46.00000 | 50.85 | |||
Seed oil 2-8 | E | 29.75000 | 33.95 | |||
Seed oil 2-9 | E | 46.80000 | 61.05 | |||
Seed oil 3-1 | U14 | 18.75000 | 23.45 | |||
Seed oil 3-2 | U7 | 1.30000 | 9.40 | |||
Seed oil 3-3 | U7 | 81.10000 | 83.60 | |||
Seed oil 4-1 | A1_1997 | 80.55000 | 85.30 | |||
Seed oil 4-2 | A1_1997 | 95.20000 | 103.80 | |||
Seed oil 4-3 | A1_1997 | 121.65000 | 122.60 | |||
Seed oil 4-4 | A2_1997 | 195.40000 | 210.65 | |||
Seed oil 4-5 | B1_1997 | 27.05000 | 30.50 | |||
Seed oil 4-6 | C2_1997 | 127.75000 | 132.55 | |||
Seed oil 4-7 | G_1997 | 112.00000 | 113.65 | |||
Seed oil 4-8 | G_1997 | 115.20000 | 119.05 | |||
Seed oil 4-9 | G_1997 | 115.20000 | 119.05 | |||
Seed oil 4-10 | H_1997 | 42.55000 | 45.65 | |||
Seed oil 4-11 | K_1997 | 230.55000 | 238.80 | |||
Seed oil 5-1 | E | 8.95000 | 18.45 | |||
Seed oil 5-2 | J.1 | 26.15000 | 44.20 | |||
Seed oil 5-3 | L | 52.85000 | 55.60 | |||
Seed oil 5-4 | R | 14.80000 | 14.90 | |||
Seed oil 5-5 | R | 0.00000 | 7.35 | |||
Seed oil 5-6 | R | 7.35000 | 14.80 | |||
Seed oil 6-1 | C1.2 | 0.00000 | 18.90 | |||
Seed oil 6-2 | G | 98.30000 | 100.30 | |||
Seed oil 6-3 | GA1_30 | 0.00000 | 4.85 | |||
Seed oil 6-4 | G | 96.69000 | 98.69 | |||
Seed oil 6-5 | H.1 | 0.00000 | 17.25 | |||
Seed oil 7-1 | H | 2.75000 | 38.35 | |||
Seed oil 8-1 | A1 | 88.70000 | 90.70 | |||
Seed oil 8-2 | C1 | -1.00000 | 1.00 | |||
Seed oil 9-1 | C1 | -1.10000 | 1.10 | |||
Seed oil 9-2 | C2 | 42.40000 | 44.40 | |||
Seed oil 9-3 | L | 114.40000 | 116.00 | |||
Seed oil 10-1 | A1 | 79.20000 | 81.20 | |||
Seed oil 11-1 | I | 11.30000 | 13.30 | |||
Seed oil 12-1 | I | 11.30000 | 13.30 | |||
Seed oil 13-1 | A1 | 80.20000 | 82.20 | |||
Seed oil 13-2 | D1a+Q | 75.50000 | 77.50 | |||
Seed oil 13-3 | F | 81.30000 | 83.30 | |||
Seed oil 13-4 | I | 31.70000 | 33.70 | |||
Seed oil 13-5 | I | 110.80000 | 112.80 | |||
Seed oil 14-1 | B2 | 71.10000 | 73.10 | |||
Seed oil 14-2 | K | 103.79000 | 105.79 | |||
Seed oil 14-3 | I | 21.84000 | 23.84 | |||
Seed oil 15-1 | I | 36.40000 | 36.94 | |||
Seed oil 19-1 | D1b | 115.35000 | 117.35 | |||
Seed oil 19-2 | H | 88.52000 | 90.52 | |||
Seed oil 19-3 | O | 49.71000 | 54.20 | |||
Seed oil 20-1 | C1 | 122.79000 | 124.79 | |||
Seed oil 20-2 | D1b | 36.07000 | 38.07 | |||
Seed oil 20-3 | J | 24.51000 | 26.51 | |||
Seed oil 23-1 | C2 | 107.59000 | 117.77 | |||
Seed oil 23-2 | D1a | 17.52000 | 56.20 | |||
Seed oil 23-3 | D2 | 24.52000 | 57.07 | |||
Seed oil 23-4 | L | 66.51000 | 89.13 | |||
Seed oil 23-5 | L | 91.10000 | 101.90 | |||
Seed oil 23-6 | M | 35.85000 | 49.90 | |||
Seed oil 24-1 | A2 | 13.99000 | 15.99 | |||
Seed oil 24-2 | O | 4.44000 | 6.44 | |||
Seed oil 24-3 | D1b | 116.34000 | 137.05 | |||
Seed oil 24-4 | F | 11.37000 | 16.08 | |||
Seed oil 24-5 | N | 28.52000 | 32.84 | |||
Seed oil 24-6 | I | 49.11000 | 51.11 | |||
Seed oil 24-7 | L | 67.26000 | 69.26 | |||
Seed oil 24-8 | D2 | 84.18000 | 92.12 | |||
Seed oil 24-9 | L | 30.58000 | 31.21 | |||
Seed oil 24-10 | D1a | 68.91000 | 70.91 | |||
Seed oil 24-11 | B1 | 36.48000 | 46.38 | |||
Seed oil 24-12 | G | 58.00000 | 63.00 | |||
Seed oil 24-13 | N | 31.84000 | 33.84 | |||
Seed oil 24-14 | B1 | 80.30000 | 82.30 | |||
Seed oil 24-15 | A1 | 91.24000 | 94.19 | |||
Seed oil 24-16 | A1 | 28.08000 | 30.28 | |||
Seed oil 24-17 | B2 | 68.98000 | 78.66 | |||
Seed oil 24-18 | C1 | 5.36000 | 15.67 | |||
Seed oil 24-19 | D1a | 56.43000 | 59.00 | |||
Seed oil 24-20 | D1a | 68.62000 | 72.26 | |||
Seed oil 24-21 | D1a | 85.48000 | 91.26 | |||
Seed oil 24-22 | D2 | 75.29000 | 80.19 | |||
Seed oil 24-23 | E | 22.84000 | 28.27 | |||
Seed oil 24-24 | E | 28.27000 | 35.79 | |||
Seed oil 24-25 | F | 1.09000 | 3.04 | |||
Seed oil 24-26 | G | 65.56000 | 73.41 | |||
Seed oil 24-27 | G | 94.40000 | 96.57 | |||
Seed oil 24-28 | H | 86.48000 | 90.25 | |||
Seed oil 24-29 | I | 30.56000 | 34.66 | |||
Seed oil 24-30 | I | 36.02000 | 49.34 | |||
Seed oil 24-31 | K | 97.13000 | 106.52 | |||
Seed oil 24-32 | L | 33.70000 | 36.04 | |||
Seed oil 24-33 | L | 90.34000 | 95.37 | |||
Seed oil 24-34 | N | 92.55000 | 102.05 | |||
Seed oil 25-1 | B2 | 115.23000 | 117.23 | |||
Seed oil 25-2 | M | 39.35000 | 41.35 | |||
Seed oil 25-3 | No Positional Data | |||||
Seed oil 25-4 | No Positional Data | |||||
Seed oil 26-1 | D1b | 7.63000 | 9.63 | |||
Seed oil 27-1 | C2 | 106.58000 | 108.58 | |||
Seed oil 27-2 | E | 31.27000 | 33.27 | |||
Seed oil 27-3 | I | 17.50000 | 19.50 | |||
Seed oil 27-4 | I | 49.11000 | 51.11 | |||
Seed oil 27-5 | L | 13.03000 | 15.03 | |||
Seed oil 27-6 | C2 | 112.38000 | 114.38 | |||
Seed oil 27-7 | I | 26.98000 | 28.98 | |||
Seed oil 27-8 | I | 57.82000 | 59.82 | |||
Seed oil 27-9 | I | 85.73000 | 87.73 | |||
Seed oil 27-10 | G | 47.79000 | 49.79 | |||
Seed oil 27-11 | No Positional Data | |||||
Seed oil 27-12 | No Positional Data | |||||
Seed oil 28-1 | B2 | 72.20000 | 75.40 | |||
Seed oil 28-2 | N | 91.55000 | 102.55 | |||
Seed oil 28-3 | N | 101.05000 | 115.05 | |||
Seed oil 28-4 | No Positional Data | |||||
Seed oil 29-1 | C1 | 61.88000 | 65.08 | |||
Seed oil 29-2 | E | 53.10000 | 57.70 | |||
Seed oil 29-3 | O | 121.04000 | 127.50 | |||
Seed oil 30-1 | A1 | 85.58000 | 96.58 | |||
Seed oil 30-2 | A2 | 50.36000 | 53.36 | |||
Seed oil 30-3 | A2 | 54.91000 | 78.21 | |||
Seed oil 30-4 | B2 | 72.80000 | 89.90 | |||
Seed oil 30-5 | C2 | 100.78000 | 107.58 | |||
Seed oil 30-6 | D2 | 105.44000 | 113.74 | |||
Seed oil 31-1 | D1b | 86.19000 | 88.19 | |||
Seed oil 31-2 | C2 | 112.95000 | 114.95 | |||
Seed oil 31-3 | L | 29.93000 | 31.93 | |||
Seed oil 32-1 | E | 15.72000 | 22.86 | |||
Seed oil 32-2 | H | 45.95000 | 47.95 | |||
Seed oil 32-3 | I | 30.78000 | 42.02 | |||
Seed oil 33-1 | C2 | 112.95000 | 114.95 | |||
Seed oil 33-2 | C2 | 106.58000 | 108.58 | |||
Seed oil 33-3 | I | 85.73000 | 87.73 | |||
Seed oil 34-1 | A2 | 54.91000 | 79.75 | |||
Seed oil 34-2 | B2 | 60.08000 | 86.56 | |||
Seed oil 34-3 | I | 27.53000 | 35.16 | |||
Seed oil 34-4 | J | 25.12000 | 31.12 | |||
Seed oil 34-5 | M | 130.75000 | 140.18 | |||
Seed oil 34-6 | O | 35.39000 | 49.39 | |||
Seed oil 34-7 | M | 94.69000 | 110.80 | |||
Seed oil 35-1 | A1 | 92.88000 | 101.57 | |||
Seed oil 35-2 | A1 | 95.54000 | 101.57 | |||
Seed oil 36-1 | A1 | 0.00000 | 4.95 | |||
Seed oil 36-2 | C2 | 4.22000 | 8.34 | |||
Seed oil 36-3 | E | 45.09000 | 53.34 | |||
Seed oil 36-4 | F | 25.58000 | 32.32 | |||
Seed oil 36-5 | F | 59.59000 | 65.19 | |||
Seed oil 36-6 | G | 94.83000 | 99.78 | |||
Seed oil 36-7 | K | 42.38000 | 45.68 | |||
Seed oil 36-8 | K | 93.63000 | 99.53 | |||
Seed oil 36-9 | N | 97.92000 | 102.05 | |||
Seed oil 37-1 | D2 | 29.79000 | 31.79 | |||
Seed oil 37-2 | D1a | 108.66000 | 110.66 | |||
Seed oil 37-3 | K | 102.59000 | 104.59 | |||
Seed oil 37-4 | B2 | 77.83000 | 79.83 | |||
Seed oil 37-5 | H | 81.04000 | 89.51 | |||
Seed oil 37-6 | L | 13.98000 | 27.92 | |||
Seed oil 37-7 | F | 50.69000 | 77.69 | |||
Seed oil 37-8 | F | 81.97000 | 97.97 | |||
Seed oil 37-9 | J | 41.63000 | 46.53 | |||
Seed oil 37-10 | K | 50.56000 | 56.61 | |||
Seed oil 37-11 | M | 50.09000 | 60.04 | |||
Seed oil 38-1 | A1 | 28.00000 | 30.00 | |||
Seed oil 38-2 | C2 | 112.95000 | 114.95 | |||
Seed oil 38-3 | D1b | 74.29000 | 76.29 | |||
Seed oil 38-4 | F | 74.97000 | 76.97 | |||
Seed oil 39-1 | A1 | 95.68000 | 97.58 | |||
Seed oil 39-2 | B1 | 43.30000 | 53.42 | |||
Seed oil 39-3 | C1 | 41.43000 | 53.67 | |||
Seed oil 39-4 | C1 | 48.62000 | 49.08 | |||
Seed oil 39-5 | D1a | 60.40000 | 62.36 | |||
Seed oil 39-6 | D1b | 116.34000 | 126.44 | |||
Seed oil 39-7 | D2 | 64.60000 | 76.69 | |||
Seed oil 39-8 | E | 45.09000 | 46.65 | |||
Seed oil 39-9 | G | 93.86000 | 94.83 | |||
Seed oil 39-10 | I | 22.84000 | 31.94 | |||
Seed oil 39-11 | I | 20.34000 | 22.03 | |||
Seed oil 39-12 | J | 55.73000 | 78.57 | |||
Seed oil 39-13 | K | 53.89000 | 54.12 | |||
Seed oil 39-14 | N | 28.52000 | 29.28 | |||
Seed oil 39-15 | N | 37.98000 | 40.63 | |||
Seed oil 39-16 | O | 106.04000 | 108.84 | |||
Seed oil 41-1 | D1b | 76.09000 | 77.34 | |||
Seed oil 42-1 | A1 | 2.54000 | 4.54 | |||
Seed oil 42-2 | A1 | 26.98000 | 28.98 | |||
Seed oil 42-3 | A1 | 27.08000 | 29.08 | |||
Seed oil 42-4 | A1 | 29.93000 | 31.93 | |||
Seed oil 42-5 | A1 | 93.19000 | 95.19 | |||
Seed oil 42-6 | M | 49.09000 | 51.09 | |||
Seed oil 42-7 | M | 55.29000 | 57.29 | |||
Seed oil 42-8 | M | 75.41000 | 77.41 | |||
Seed oil 42-9 | M | 76.19000 | 78.19 | |||
Seed oil 42-10 | B2 | 16.77000 | 18.77 | |||
Seed oil 42-11 | B2 | 71.12000 | 73.12 | |||
Seed oil 42-12 | D2 | 65.26000 | 67.26 | |||
Seed oil 42-13 | D2 | 86.66000 | 88.66 | |||
Seed oil 42-14 | D2 | 86.66000 | 88.66 | |||
Seed oil 42-15 | D2 | 111.84000 | 113.84 | |||
Seed oil 42-16 | I | 19.34000 | 21.34 | |||
Seed oil 42-17 | I | 20.90000 | 22.90 | |||
Seed oil 42-18 | I | 21.84000 | 23.84 | |||
Seed oil 42-19 | I | 30.94000 | 32.94 | |||
Seed oil 42-20 | D1a | 39.86000 | 41.86 | |||
Seed oil 42-21 | D1a | 69.69000 | 71.69 | |||
Seed oil 42-22 | M | 34.84000 | 36.84 | |||
Seed oil 42-23 | M | 52.54000 | 54.54 | |||
Seed oil 42-24 | M | 55.29000 | 57.29 | |||
Seed oil 42-25 | M | 55.29000 | 57.29 | |||
Seed oil 42-26 | K | 29.28000 | 31.28 | |||
Seed oil 42-27 | B2 | 72.20000 | 74.20 | |||
Seed oil 42-28 | B2 | 26.62000 | 28.62 | |||
Seed oil 42-29 | E | 33.20000 | 35.20 | |||
Seed oil 42-30 | D2 | 83.17000 | 85.17 | |||
Seed oil 42-31 | G | 4.53000 | 6.53 | |||
Seed oil 42-32 | G | 50.68000 | 52.68 | |||
Seed oil 42-33 | G | 51.93000 | 53.93 | |||
Seed oil 42-34 | G | 52.41000 | 54.41 | |||
Seed oil 42-35 | G | 75.76000 | 77.76 | |||
Seed oil 42-36 | I | 17.50000 | 19.50 | |||
Seed oil 42-37 | I | 19.34000 | 21.34 | |||
Seed oil 42-38 | I | 21.84000 | 23.84 | |||
Seed oil 42-39 | I | 73.26000 | 75.26 | |||
Seed oil 43-1 | A2 | 39.82000 | 63.81 | |||
Seed oil 43-2 | B2 | 72.91000 | 93.48 | |||
Seed oil 43-3 | B2 | 72.80000 | 126.23 | |||
Seed oil 43-4 | B2 | 71.68000 | 72.12 | |||
Seed oil 43-5 | B2 | 87.58000 | 100.09 | |||
Seed oil 43-6 | B2 | 73.20000 | 126.23 | |||
Seed oil 43-7 | C2 | 145.47000 | 151.91 | |||
Seed oil 43-8 | D1a | 85.48000 | 109.66 | |||
Seed oil 43-9 | D1b | 102.59000 | 116.34 | |||
Seed oil 43-10 | D1b | 37.07000 | 52.61 | |||
Seed oil 43-11 | D1b | 75.41000 | 75.94 | |||
Seed oil 43-12 | D2 | 57.07000 | 67.70 | |||
Seed oil 43-13 | D2 | 87.87000 | 105.44 | |||
Seed oil 43-14 | D2 | 87.87000 | 105.44 | |||
Seed oil 43-15 | E | 84.62000 | 85.15 | |||
Seed oil 43-16 | G | 47.54000 | 49.54 | |||
Seed oil 43-17 | I | 27.98000 | 84.48 | |||
Seed oil 43-18 | I | 55.09000 | 99.83 | |||
Seed oil 43-19 | J | 53.68000 | 58.40 | |||
Seed oil 43-20 | J | 32.09000 | 39.63 | |||
Seed oil 43-21 | K | 4.85000 | 32.27 | |||
Seed oil 43-22 | K | 30.28000 | 99.09 | |||
Seed oil 43-23 | L | 28.27000 | 31.21 | |||
Seed oil 43-24 | L | 11.12000 | 27.92 | |||
Seed oil 43-25 | L | 30.93000 | 32.36 | |||
Seed oil 43-26 | L | 54.57000 | 87.41 | |||
Seed oil 43-27 | L | 0.00000 | 30.87 | |||
Seed oil 43-28 | L | 70.36000 | 87.41 | |||
Seed oil 43-29 | M | 13.56000 | 59.80 | |||
Seed oil 43-30 | N | 40.81000 | 102.05 | |||
Seed oil 43-31 | N | 22.67000 | 27.12 | |||
Seed oil 43-32 | N | 32.84000 | 34.52 | |||
Seed oil 43-33 | O | 59.43000 | 63.81 | |||
Seed oil 43-34 | O | 27.78000 | 93.23 | |||
Seed oil 43-35 | O | 50.11000 | 55.09 | |||
Seed oil 44-1 | K | 58.00000 | 71.01 | |||
Seed oil 44-2 | H | 8.48000 | 72.18 | |||
Seed oil 45-1 | N | 22.04000 | 25.56 | |||
Seed oil 45-2 | N | 32.04000 | 39.91 | |||
Seed oil 45-3 | A1 | 96.47000 | 97.52 | |||
Seed oil 45-4 | K | 45.39000 | 46.11 | |||
Seed oil 45-5 | F | 3.09000 | 3.13 | |||
Seed oil 45-6 | B2 | 19.87000 | 52.03 | |||
Seed oil 45-7 | B2 | 37.04000 | 64.98 | |||
Seed oil 45-8 | B2 | 57.88000 | 57.92 | |||
Seed oil 45-10 | J | 31.46000 | 33.46 | |||
Seed oil 45-11 | J | 32.46000 | 40.97 |
GWAS QTL | ||
---|---|---|
Seed oil | ||
Seed oil 10 | ||
Seed oil 11 | ||
Seed oil 2 | ||
Seed oil 3 | ||
Seed oil 4 | ||
Seed oil 5 | ||
Seed oil 6 | ||
Seed oil 7 | ||
Seed oil 8 | ||
Seed oil 9 |
Genes Related by Ontology | |
---|---|
ENOD2 | |
GmENOD13 | |
GmENOD2A | |
GmENOD2B | |
GmENOD40 | |
GmENOD40-1 | |
GmENOD40-2 | |
GmENOD55 | |
GmENOD55-1 | |
GmENOD55-2 | |
Lba | |
Lbc1 | |
Lbc2 | |
Lbc3 | |
Le1 | |
Lhcb1-7 | |
FT1a | |
FT1b | |
FT2a | |
FT2b | |
FT3a | |
FT3b | |
FT4 | |
FT5a | |
FT5b | |
FT6 | |
FTL1 | |
FTL2 | |
FTL3 | |
FTL4 | |
FTL5 | |
FTL6 | |
FTL7 | |
Lbc2A | |
LGB1 | |
PHYA1 | |
PHYA2 | |
PHYA3 | |
PHYA4 | |
PHYB1 | |
PHYB2 | |
PHYE1 | |
PHYE2 |
Uniform Trial Parentage Records | |
---|---|
A85-195005 | |
A85-291010 | |
A85-293030 | |
A85-298051 | |
A85-392026 | |
A85-393001 | |
Midwest Oilseeds 2050 | |
Midwest Oilseeds 3010 | |
Midwest Oilseeds Experimental 16727 |
Community News | ||
---|---|---|
GWAS QTL added to SoyBase Posted on Thursday, January 11th, 2018 |
Results of a search at SoyBase are presented in two complementary ways.
The user-submitted search term is used to find exact lexical matches to the name or description of data objects in SoyBase (QTL, genes, etc.). If an exact match is not found, and when the search term was two or more words, then a further search is done using the individual words. These text-based matches are reported in the Text column of the results table.
The goal of the ontology search is to identify data objects in SoyBase that are related to the search term but which might not have the exact search word(s) in their name or description. Data in SoyBase are tagged using a soybean-specific ontology termed a SOYnumber (SOY#). The user-submitted search term is used to search this SoyBase ontology for an exact match. If an exact match is not found, and when the search term was two or more words, the individual words are used in an additional search. Once a match is found its SOY# is used to traverse the ontology tree to identify related terms. These terms are then used to find SoyBase objects that are related to those directly identified by the search term. These ontology-based matches are reported in the Ontology column of the results table.
Occasionally unrelated SoyBase data objects will be reported in the Ontology-based results along with the correctly identified ones. This is an unavoidable consequence of the the way we have structured the underlying trait, structure and development ontologies at SoyBase. For example a search for 'protein' also returns 'oil'-related objects since both are seed components.
Data Category | Search Was Performed Against |
---|---|
Genetic Marker | Genetic Markers (SNPs, SSRs, etc.). |
Gene | Gene records (ex. Glyma.15g026400, Fad2-1). |
QTL | Bi-Parental QTL and GWAS QTL collections. |
Germplasm Collections | The Induced Mutant and Uniform Field Trial records. |
Publications | Paper records and abstracts held within the Soybase data set. |
Sitemap, News & Tutorials | SoyBase Sitemap, News archive, Upcoming meetings and Tutorials. |
As an example of how these two searching capabilities can be helpful, a search for 'oil' will return those QTL that contain the word 'oil' in their name ('Seed oil', 'Seed oil to protein ratio', etc.) in the QTL line of the Text column. The Ontology column will contain these QTL along with the related QTL 'Seed palmitate', 'Seed oleic', etc.
Note: Because of the idiosyncratic ways that authors name phenotypic and developmental traits it is always advisable to look through the Ontology-based results, even when the submitted search term seems unambiguous. This can reveal additional SoyBase objects that might have been missed using exact text matching.
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||