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GWAS Report for Stem diameter, main 2

Experimental Details

Number of germplasm analyzed	429
Number of loci tested	6159
Platform name	GBS
Platform details	GBS

Publication for This Experiment

QTL mapping of the genetic basis of stem diameter in soybean
(Sun et al. 2021)

Sun et al., Planta (2021), 253:109
/10.1007/s00425-021-03628-x

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001624
PO	PO:0006341
TO	TO:0020083

Comments

Compilation of multiple years and populations, Only QTL present across years presented, see paper for more details.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Stem diameter, main 2-g1	q11	7.63	Gm11	B1
QTL from Table 2, see paper for details
Stem diameter, main 2-g2	q14	3.83	Gm14	B2
QTL from Table 2, see paper for details
Stem diameter, main 2-g3	q19	2.93	Gm19	L
QTL from Table 2, see paper for details

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