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GWAS Report for Seed palmitic 4

Experimental Details

Number of germplasm analyzed	321
Number of loci tested	52,041
Platform name	SoySNP50K
Platform details	Illumina Infinium SoySNP50K BeadChip

Publication for This Experiment

Genome-wide Scan for Seed Composition Provides Insights into Soybean Quality Improvement and the Impacts of Domestication and Breeding
(Zhang et al. 2018a)

Molecular Plant 2018, 11(3):460-472
10.1016/j.molp.2017.12.016

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001673
CHEBI	CHEBI:15756
PO	PO:0009010
TO	TO:0000491

Other traits reported in this paper

• Seed protein 6
• Seed oil 8
• Seed stearic 3
• Seed oleic 3
• seed linoleic 3
• Seed linolenic 3
• Seed Ala 1
• Seed Arg 1
• Seed Asp 1
• Seed Cys 1
• Seed Glu 1
• Seed Gly 1
• Seed His 1
• Seed Ile 1
• Seed Leu 1
• Seed Lys 1
• Seed Met 1
• Seed Phe 1
• Seed Pro 1
• Seed Ser 1
• Seed Thr 1
• Seed Trp 1
• Seed Tyr 1
• Seed Val 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Seed palmitic 4-g1	ss715592503	9.9	Glyma.05g012300	Gm05	A1
Seed palmitic 4-g2	ss715594516	3.5		Gm06	C2
Seed palmitic 4-g3	ss715602709	5.2		Gm08	A2
Seed palmitic 4-g4	ss715618427	5.1		Gm14	B2
Seed palmitic 4-g5	ss715618299	6.2		Gm14	B2
Seed palmitic 4-g6	ss715619208	4.6	Glyma.14g197200	Gm14	B2
Seed palmitic 4-g7	ss715621537	5.9		Gm15	E

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