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GWAS Report for Seed linolenic 3

Experimental Details

Number of germplasm analyzed	321
Number of loci tested	52,041
Platform name	SoySNP50K
Platform details	Illumina Infinium SoySNP50K BeadChip

Publication for This Experiment

Genome-wide Scan for Seed Composition Provides Insights into Soybean Quality Improvement and the Impacts of Domestication and Breeding
(Zhang et al. 2018a)

Molecular Plant 2018, 11(3):460-472
10.1016/j.molp.2017.12.016

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001392
CHEBI	CHEBI:27432
PO	PO:0009010
TO	TO:0005005

Other traits reported in this paper

• Seed protein 6
• Seed oil 8
• Seed palmitic 4
• Seed stearic 3
• Seed oleic 3
• seed linoleic 3
• Seed Ala 1
• Seed Arg 1
• Seed Asp 1
• Seed Cys 1
• Seed Glu 1
• Seed Gly 1
• Seed His 1
• Seed Ile 1
• Seed Leu 1
• Seed Lys 1
• Seed Met 1
• Seed Phe 1
• Seed Pro 1
• Seed Ser 1
• Seed Thr 1
• Seed Trp 1
• Seed Tyr 1
• Seed Val 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Seed linolenic 3-g1	ss715619179	4.6		Gm14	B2
Seed linolenic 3-g2	ss715621481	5		Gm15	E
Seed linolenic 3-g3	ss715621777	5.6		Gm15	E

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