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GWAS Report for Seed oil 8

Experimental Details

Number of germplasm analyzed	321
Number of loci tested	52,041
Platform name	SoySNP50K
Platform details	Illumina Infinium SoySNP50K BeadChip

Publication for This Experiment

Genome-wide Scan for Seed Composition Provides Insights into Soybean Quality Improvement and the Impacts of Domestication and Breeding
(Zhang et al. 2018a)

Molecular Plant 2018, 11(3):460-472
10.1016/j.molp.2017.12.016

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001668
PO	PO:0009010
TO	TO:0000604

Other traits reported in this paper

• Seed protein 6
• Seed palmitic 4
• Seed stearic 3
• Seed oleic 3
• seed linoleic 3
• Seed linolenic 3
• Seed Ala 1
• Seed Arg 1
• Seed Asp 1
• Seed Cys 1
• Seed Glu 1
• Seed Gly 1
• Seed His 1
• Seed Ile 1
• Seed Leu 1
• Seed Lys 1
• Seed Met 1
• Seed Phe 1
• Seed Pro 1
• Seed Ser 1
• Seed Thr 1
• Seed Trp 1
• Seed Tyr 1
• Seed Val 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Seed oil 8-g1	ss715586293	2.4	Glyma.03g220700	Gm03	N
Seed oil 8-g2	ss715590407	0.8		Gm05	A1
Seed oil 8-g3	ss715591687	2.8		Gm05	A1
Seed oil 8-g4	ss715591638	2.8	Glyma.05g245000	Gm05	A1
Seed oil 8-g5	ss715591630	2.2		Gm05	A1
Seed oil 8-g6	ss715591621	2.1		Gm05	A1
Seed oil 8-g7	ss715593620	0.8		Gm06	C2
Seed oil 8-g8	ss715597212	2.1		Gm07	M
Seed oil 8-g9	ss715597475	2.5		Gm07	M
Seed oil 8-g10	ss715597771	2.1		Gm07	M
Seed oil 8-g11	ss715600039	1.6		Gm08	A2
Seed oil 8-g12	ss715602707	3		Gm08	A2
Seed oil 8-g13	ss715602839	4		Gm08	A2
Seed oil 8-g14	ss715600011	0.8		Gm08	A2
Seed oil 8-g15	ss715616488	2.2		Gm13	F
Seed oil 8-g16	ss715619006	2.2		Gm14	B2
Seed oil 8-g17	ss715621742	2.7		Gm15	E
Seed oil 8-g18	ss715621777	2.8	Glyma.15g049700, Glyma.15g049900	Gm15	E
Seed oil 8-g19	ss715622952	3.1		Gm15	E
Seed oil 8-g20	ss715625387	3.9		Gm16	J
Seed oil 8-g21	ss715624783	0.9		Gm16	J
Seed oil 8-g22	ss715628327	1.5		Gm17	D2
Seed oil 8-g23	ss715631635	2.1		Gm18	G
Seed oil 8-g24	ss715629475	2.6		Gm18	G
Seed oil 8-g25	ss715631395	2.3		Gm18	G

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