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GWAS Report for Iron deficiency chlorosis 2

Experimental Details

Number of germplasm analyzed	141
Number of loci tested	88
Platform name	GoldenGate SNP assay
Platform details	Illumina USLP 1.0

Publication for This Experiment

Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean
(Mamidi et. Al. (2011a))

The Plant Genome 2011, 4:154-164
10.3835/plantgenome2011.04.0011

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001373
TO	TO:0000224

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	p-value	Chromosome	Linkage Group
Iron deficiency chlorosis 2-g1	ss107918691	0.243	2.94E-08	Gm02	D1b
Iron deficiency chlorosis 2-g2	ss107920575	0.157	1.26E-05	Gm03	N
Iron deficiency chlorosis 2-g3	ss107927657	0.139	0.000165577	Gm03	N
Iron deficiency chlorosis 2-g4	ss107913086	0.139	0.000165577	Gm03	N
Iron deficiency chlorosis 2-g5	ss107912865	0.026	9.59E-05	Gm06	C2
Iron deficiency chlorosis 2-g6	ss107913778	0.135	2.83E-05	Gm07	M
Iron deficiency chlorosis 2-g7	ss107913443	0.159	9.82E-05	Gm13	F
Iron deficiency chlorosis 2-g8	ss107924542	0.134	0.002500345	Gm13	F
Iron deficiency chlorosis 2-g9	ss107927321	0.107	7.52E-05	Gm19	L

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