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GWAS Report for Seed palmitic 5

Experimental Details

Number of germplasm analyzed	421
Number of loci tested	1536
Platform name	Illumina BeadArray
Platform details	SNP genotyping array

Publication for This Experiment

Targeted association mapping demonstrating the complex molecular genetics of fatty acid formation in soybean
(Li et al. 2015a)

BMC Genomics 2015, 16:841
10.1186/s12864-015-2049-4

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001673
CHEBI	CHEBI:15756
PO	PO:0009010
TO	TO:1000075

Other traits reported in this paper

• Seed linoleic 4
• Seed linolenic 4
• Seed oleic 4
• Seed stearic 4

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Seed palmitic 5-g1	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-0751	0.04	Glyma05g07630	Gm05	A1
Seed palmitic 5-g2	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-6064	0.077	Glyma05g07730	Gm05	A1
Seed palmitic 5-g3	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-1323	0.025	Glyma07g18890	Gm07	M
Seed palmitic 5-g4	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-6356	0.024	Glyma09g09800	Gm09	K
Seed palmitic 5-g5	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-6395	0.025	Glyma12g01380	Gm12	H
Seed palmitic 5-g6	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	Map-6540	0.02	Glyma15g17090	Gm15	E
Seed palmitic 5-g7	Map-6590	ss107913277	0.032	Glyma15g41680	Gm15	E

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