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GWAS Report for Iron deficiency chlorosis 4

Experimental Details

Number of germplasm analyzed	270
Number of loci tested	79000
Platform name	GBS
Platform details	genotype-by-sequencing

Publication for This Experiment

Genome-Wide Association Studies Identifies Seven Major Regions Responsible for Iron Deficiency Chlorosis in Soybean (Glycine max)
(Mamidi et al. 2014a)

PLoS ONE 2014, 9(9):e107469
10.1371/journal.pone.0107469

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001373
TO	TO:0000224

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Iron deficiency chlorosis 4-g1	Gm02:43850877	5.20		Gm02	D1b
Iron deficiency chlorosis 4-g2	Gm03:42920376	15.20	Glyma03g38620	Gm03	N
Iron deficiency chlorosis 4-g3	Gm03:42923228	15.20	Glyma03g38620	Gm03	N
Iron deficiency chlorosis 4-g4	Gm03:42963950	14.42		Gm03	N
Iron deficiency chlorosis 4-g5	Gm03:42977988	15.20		Gm03	N
Iron deficiency chlorosis 4-g6.1	Gm03:43104890	15.77		Gm03	N
Iron deficiency chlorosis 4-g6.2	ss715586372	14.71		Gm03	N
Iron deficiency chlorosis 4-g7	ss715586373	13.87		Gm03	N
Iron deficiency chlorosis 4-g8	Gm03:43338975	17.28		Gm03	N
Iron deficiency chlorosis 4-g9	Gm03:43339270	18.85		Gm03	N
Iron deficiency chlorosis 4-g10	Gm05:300244	10.81		Gm05	A1
Iron deficiency chlorosis 4-g11	Gm05:294856	11.43		Gm05	A1
Iron deficiency chlorosis 4-g12	Gm05:240477	8.30		Gm05	A1
Iron deficiency chlorosis 4-g13.1	Gm05:15885333	0.08		Gm05	A1
Iron deficiency chlorosis 4-g13.2	Gm05:15885321	0.08		Gm05	A1
Iron deficiency chlorosis 4-g13.3	Gm05:15885316	0.08		Gm05	A1
Iron deficiency chlorosis 4-g14	Gm07:6435967	8.80		Gm07	M
Iron deficiency chlorosis 4-g15	Gm07:6444069	8.80		Gm07	M
Iron deficiency chlorosis 4-g16	ss715598504	8.10		Gm07	M
Iron deficiency chlorosis 4-g17	Gm07:6613954	8.80		Gm07	M
Iron deficiency chlorosis 4-g18.1	Gm11:539091	4.73		Gm11	B1
Iron deficiency chlorosis 4-g18.2	Gm11:539092	4.73		Gm11	B1
Iron deficiency chlorosis 4-g18.3	Gm11:539093	4.73		Gm11	B1
Iron deficiency chlorosis 4-g19	Gm12:27690435	0.02		Gm12	H
Iron deficiency chlorosis 4-g20	Gm15:21479453	2.10		Gm15	E
Iron deficiency chlorosis 4-g21	Gm16:27643739	4.80		Gm16	J
Iron deficiency chlorosis 4-g22	Gm17:25482971	0.66		Gm17	D2
Iron deficiency chlorosis 4-g23.1	Gm17:25482974	0.66		Gm17	D2
Iron deficiency chlorosis 4-g23.2	Gm18:15646012	3.25		Gm18	G
Iron deficiency chlorosis 4-g24	Gm18:30878841	3.78		Gm18	G
Iron deficiency chlorosis 4-g25	Gm18:55012843	0.7		Gm18	G
Iron deficiency chlorosis 4-g26	Gm19:35099001	0.81		Gm19	L
Iron deficiency chlorosis 4-g27	Gm19:40386502	15.62		Gm19	L

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