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GWAS Report for Seed protein 10

Experimental Details

Number of germplasm analyzed	383
Number of loci tested	24738
Platform name	GBS

Publication for This Experiment

Genomic regions associated with important seed quality traits in food-grade soybeans
(Whiting et al. 2020)

Whiting et al. BMC Plant Biology (2020) 20:485
10.1186/s12870-020-02681-0

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002216

Other traits reported in this paper

• Sucrose 2
• Seed weight 14

Comments

Two populations created, Data pooled

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	R2	LOD	Chromosome	Linkage Group
Seed protein 10-g1	qPro_Gm01-2	10.4	4.56	Gm01	D1a
Only flanking markers given
Seed protein 10-g2	qPro_Gm02-3	10.4	5.16	Gm02	D1b
Only flanking markers given
Seed protein 10-g3	qPro_Gm04-3	11	5.25	Gm04	C1
Only flanking markers given
Seed protein 10-g4	qPro_Gm04-4	13.7	6.03	Gm04	C1
Only flanking markers given
Seed protein 10-g5	qPro_Gm05-2	14.2	6.8	Gm05	A1
Only flanking markers given
Seed protein 10-g6	qPro_Gm06-1	21.9	10.19	Gm06	C2
Only flanking markers given
Seed protein 10-g7	qPro_Gm06-3	12.6	5.51	Gm06	C2
Only flanking markers given
Seed protein 10-g8	qPro_Gm06-6	13.2	5.8	Gm06	C2
Only flanking markers given
Seed protein 10-g9	qPro_Gm08-2	12.3	5.38	Gm08	A2
Only flanking markers given
Seed protein 10-g10	qPro_Gm12-3	11.6	6.45	Gm12	H
Only flanking markers given
Seed protein 10-g11	qPro_Gm12-4	12	6.63	Gm12	H
Only flanking markers given
Seed protein 10-g12	qPro_Gm13-4	11.6	8.54	Gm13	F
Only flanking markers given
Seed protein 10-g13	qPro_Gm15-3	11.5	5.63	Gm15	E
Only flanking markers given
Seed protein 10-g14	qPro_Gm18-4	10.4	4.5	Gm18	G
Only flanking markers given

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