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GWAS Report for Seed weight 14

Experimental Details

Number of germplasm analyzed	383
Number of loci tested	24738
Platform name	GBS

Publication for This Experiment

Genomic regions associated with important seed quality traits in food-grade soybeans
(Whiting et al. 2020)

Whiting et al. BMC Plant Biology (2020) 20:485
10.1186/s12870-020-02681-0

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001623
CHEBI	CHEBI:17992
PO	PO:0009010
TO	TO:000328

Other traits reported in this paper

• Seed protein 10
• Sucrose 2

Comments

Two populations created, Data pooled

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	R2	LOD	Chromosome	Linkage Group
Seed weight 14-g1	qWt_Gm5-2	8.1	3.98	Gm05	A1
Seed weight 14-g2	qWt-Gm6-1	10.3	4.46	Gm06	C2
Seed weight 14-g3	qWt_gm6-3	9.4	4.2	Gm06	C2
Seed weight 14-g4	qWt_Gm8-2	9.6	4.29	Gm08	A2
Seed weight 14-g5	qWt_Gm15-4	5.3	2.78	Gm15	E

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