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GWAS Report for Seed protein 9

Experimental Details

Number of germplasm analyzed	220
Number of loci tested	169028
Platform name	SoyaSNP 180K
Platform details	Axiom 180K SoyaSNP Chip

Publication for This Experiment

Quantitative trait locus analysis for soybean (Glycine max) seed protein and oil concentrations using selected breeding populations
(Seo et al. 2018)

/10.1111/pbr.12659

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001676
PO	PO:0009010
TO	TO:0000598

Other traits reported in this paper

• Seed oil 10

Comments

Mulitple years sampled, only QTL from Combined years represented

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Seed protein 9-g1	qSPC_01	14.3	Gm02	D1b
Seed protein 9-g2	qSPC_02	15.3	Gm02	D1b
Seed protein 9-g3	qSPC_04	4.3	Gm06	C2
Seed protein 9-g4	qSPC_09	9.4	Gm15	E
Seed protein 9-g5	qHPO17_1	5	Gm17	D2
Seed protein 9-g6	qSPC_12	3.8	Gm19	L
Seed protein 9-g7	qHPO20	10.2	Gm20	I

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