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GWAS Report for Iron deficiency chlorosis 3

Experimental Details

Number of germplasm analyzed	284
Number of loci tested	1536
Platform name	USLP
Platform details	Universal 1536 soybean Golden Gate single nucleotide polymorphism (SNP) set

Publication for This Experiment

Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean
(Mamidi et al. 2011a)

The Plant Genome. 2011, 4:154164
10.3835/plantgenome2011.04.0011

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001373
TO	TO:0000224

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Iron deficiency chlorosis 3-g1	ss107927657	16.26	Glyma03g39050	Gm03	N
Iron deficiency chlorosis 3-g2	ss107923476	0.72	Glyma05g01460	Gm05	A1
Iron deficiency chlorosis 3-g3	ss107916955	0.07	Glyma05g37300	Gm05	A1
Iron deficiency chlorosis 3-g4	ss107924009	4.78	Glyma07g10870	Gm07	M
Iron deficiency chlorosis 3-g6	ss107928908	1.64	Glyma11g35610	Gm11	B1
Iron deficiency chlorosis 3-g7	ss107915800	7.83	Glyma13g27300	Gm13	F
Iron deficiency chlorosis 3-g8	ss107920392	12.66	Glyma15g41620	Gm15	E
Iron deficiency chlorosis 3-g9	ss107918800	4.55	Glyma16g03770	Gm16	J
Iron deficiency chlorosis 3-g10	ss107914365	0.47	Glyma16g33840	Gm16	J
Iron deficiency chlorosis 3-g11	ss107920404	0.25	Glyma17g06930	Gm17	D2
Iron deficiency chlorosis 3-g12	ss107914461	2.07	Glyma18g02800	Gm18	G
Iron deficiency chlorosis 3-g13	ss107913107	2.77	Glyma18g47060	Gm18	G
Iron deficiency chlorosis 3-g14	ss107927321	15.41	Glyma19g32400	Gm19	L
Iron deficiency chlorosis 3-g15	ss107920153	2.33	Glyma20g00690	Gm20	I

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