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GWAS Report for Carbon isotope discrimination 5

Experimental Details

Number of germplasm analyzed	168
Number of loci tested	548
Platform name	GBS
Platform details	genotype-by-sequencing

Publication for This Experiment

Mapping and confirmation of quantitative trait loci (QTLs) associated with carbon isotope ratio (13C) in soybean.
(Bazzer et al. 2022)

Bazzer et al., Crop Science 2020; 60:2479–2499
10.1002/csc2.20240

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001326
PO	PO:0000003
TO	TO:0002643

Other traits reported in this paper

• Carbon isotope discrimination 1
• Carbon isotope discrimination 2
• Carbon isotope discrimination 3
• Carbon isotope discrimination 4
• Carbon isotope discrimination 6
• Carbon isotope discrimination 7

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	LOD	Chromosome	Linkage Group
Carbon isotope discrimination 5-g1	Gm04-ST12-MIM	ss107923464	0.08	3.85	Gm04	C1
Carbon isotope discrimination 5-g2	Gm06-ST12-MIM	ss107914184	0.14	7.66	Gm06	C2
Carbon isotope discrimination 5-g3	Gm20-ST12-MIM	ss107920249	0.23	11.98	Gm20	I

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