---

Click Here to View Full List of GWAS QTL

GWAS Report for Seed protein 3

Experimental Details

Number of germplasm analyzed	12,116
Number of loci tested	52,041
Platform name	SoySNP50k
Platform details	Illumina Infinium BeadChip

Publication for This Experiment

A Population Structure and Genome-Wide Association Analysis on the USDA Soybean Germplasm Collection
(Bandillo et al. 2015a)

The Plant Genome. 2015, 8(3)
10.3835/plantgenome2015.04.0024

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001676
PO	PO:0009010
TO	TO:0000598

Other traits reported in this paper

• Seed oil 4

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	p-value	Chromosome	Linkage Group
Seed protein 3-g1	ss715637225	3.24E-06	Gm20	I
This GWAS QTL was originally reported on Gm14. The SNP associated with this QTL is located on Gm02.
Seed protein 3-g2	ss715637240	6.92E-07	Gm20	I
Seed protein 3-g3	ss715637283	4.47E-11	Gm20	I
Seed protein 3-g4	ss715637294	1.15E-31	Gm20	I
Seed protein 3-g5	ss715637299	5.25E-33	Gm20	I
Seed protein 3-g6	ss715637309	1.35E-08	Gm20	I
Seed protein 3-g7	ss715637315	1.05E-25	Gm20	I
Seed protein 3-g8	ss715637316	6.92E-23	Gm20	I
Seed protein 3-g9	ss715637318	1.15E-14	Gm20	I
Seed protein 3-g10	ss715637321	5.62E-20	Gm20	I
Seed protein 3-g11	ss715637329	2.09E-18	Gm20	I
Seed protein 3-g12	ss715621777	5.89E-20	Gm15	E
Seed protein 3-g13	ss715621799	2.69E-10	Gm15	E
Seed protein 3-g14	ss715621801	7.94E-11	Gm15	E
Seed protein 3-g15	ss715621816	1.07E-07	Gm15	E
Seed protein 3-g16	ss715614263	1.12E-11	Gm13	F
Seed protein 3-g17	ss715595353	4.27E-06	Gm06	C2
Seed protein 3-g18	ss715595357	1.45E-06	Gm06	C2
Seed protein 3-g19	ss715594540	1.66E-06	Gm06	C2

---

Click Here to View Full List of GWAS QTL