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GWAS Report for Seed linoleic 5

Experimental Details

Number of germplasm analyzed	181
Number of loci tested	11003
Platform name	GBS
Platform details	SLAF-seq

Publication for This Experiment

Quantitative trait loci analysis of seed oil content and composition of wild and cultivated soybean
(Yao et al. 2020)

Yao et al. (2020) BMC Plant Biology 20:51
10.1186/s12870-019-2199-7

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001391
CHEBI	CHEBI:17351
PO	PO:000901
TO	TO:0005001

Other traits reported in this paper

• Seed oil 11
• Seed palmitic 6
• Seed stearic 5
• Seed oleic 5
• Seed linolenic 5

Comments

Multi-year and Multi-location QTL presented.., Only ranges given

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Seed linoleic 5-g1	qLA5_1	4.5	Gm05	A1
Seed linoleic 5-g2	qLA5_2	3.7	Gm05	A1
Seed linoleic 5-g3	qLA11_1	4.5	Gm11	B1
Seed linoleic 5-g4	qLA11_2	4.3	Gm11	B1

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