Download genetic map coordinates for selected features
Data are available for the Composite Genetic Map or the Consensus Genetic Map
First choose the Linkage Group. Then choose a genetic map feature type.
Enter the range of interest in cM. Use a range of 0-9999 to retrieve all features for a linkage group.
cM
cM
Download sequences for genetic loci
Genome Sequence
Download sequences from SoyBase BLAST target databases
SoyBase provides a number of specialized databases used with BLAST sequence similarity searching. Their sequences can be downloaded in FASTA format here.
Download genome sequence coordinates for selected features
Retrieve Gene Model positions by Gene Model Name
Use this tool to retrieve the sequence coordinates for a list of soybean gene calls. A table containing the chromosome and the beginning and end positions (in bp on the chromosome) for each gene call will be returned along with a text file that you can download to your computer from the "Download Results" button.
First upload a file of gene call names as seen on the genome sequence.
Download genome sequence coordinates for selected features by chromosome
Use this tool to retrieve the sequence coordinates for all of the markers or gene calls on a single chromosome or for the whole genome. Currently only gene calls or molecular markers are available. A table containing the chromosome and the beginning and end positions (in bp on the chromosome) will be returned.
First choose the assembly you are interested in. Next choose the chromosome you are interested in. Then choose the type of feature you want to retrieve. The result of the search will be a text file that can be downloaded when the "Download Results" button appears.
Download a list of names and sequence coordinates for gene models or markers in a chromosomal region
Download longest transcript or predicted protein sequence for gene calls
Use this tool to submit a list of one or more gene models. A table containing the chromosome and the beginning and end positions (in bp on the chromosome) will be returned.
First upload a file of gene calls as seen on the genome sequence. Then choose the sequence type desired. The result of the search will be a text file avaliable for download to your computer.
The "Retrieve All" button will retrieve the gene call sequences for all chromosomes. (Please select a Sequence Type first).
This tool accepts a list of Wm82 gene model names (eg. Glyma12g10780) and returns functional, biological process, cellular compartment and other annotations for a gene list.
The complete data set for 20,087 G. max and G. soja accessions genotyped with 42,509 SNPs is available for Wm82.a1 in vcf or bcf format and Wm82.a2 in either vcf or bcf format can be downloaded here.
SNP position data can be retrieved in either the Wm82.a1.v1.1 or Wm82.a2.v1 coordinate system. Not all SNP's called in the Wm82.a1.v1.1 coordinate system
could be positioned on the Wm82.a2.v1 coordinate system because the flanking sequence was not present in the assembly. Not all published SNPs are available here, only those
that are referred to on SoyBase pages are available.
Get SNP positions based on SNP name
This is a SNP name based search service. The SNP name must be
the same as that used at SoyBase. The output will be printed to your
browser separated by tabs (TSV).
SoyBase
SoyBase transitions to NEW site on 10/1/2024
