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GWAS Report for Seed oil 9

Experimental Details

Number of germplasm analyzed	289
Number of loci tested	6000
Platform name	SoySNP6K
Platform details	Illumina Infinium BeadChip

Publication for This Experiment

Mining QTLs and candidate genes for seed protein and oil contents across multiple environments and backgrounds in soybean
(Li et al. 2019)

Li et al. Mol. Breeding (2019) 39:139
10.1007/s11032-019-1055-7

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001668
PO	PO:0009010
TO	TO:0000604

Other traits reported in this paper

• Seed protein 8
• Seed oil to protein ratio 2

Comments

Two populations used in 5 environments. Only ZL population and environment 4 used.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Seed oil 9-g1	qOIL-A1_E4	18.07	Gm05	A1
Seen in two populations, Environment 4, only a range given

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