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GWAS Report for Seed stearic 2

Experimental Details

Number of germplasm analyzed	570
Number of loci tested	52041
Platform name	SNP50k
Platform details	Illumina Soy SNP50k iSelect BeadChip

Publication for This Experiment

A genome-wide association study of seed composition traits in wild soybean (Glycine soja)
(Leamy et al. 2017a)

BMC Genomics 2017, 18:18
10.1186/s12864-016-3397-4

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001673
CHEBI	CHEBI:15756
PO	PO:0009010
TO	TO:0000491

Other traits reported in this paper

• Seed protein 5
• Seed oil 7
• Seed palmitic 3
• Seed oleic 2
• Seed linoleic 2
• Seed linolenic 2

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Candidate gene	Chromosome	Linkage Group
Seed stearic 2-g1	ss715618427	2.95	Glyma.14G121400	Gm14	B2
Seed stearic 2-g2	ss715618430	3.15		Gm14	B2
Seed stearic 2-g3	ss715625341	3.76	Glyma.16G068500	Gm16	J

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