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Data Category^?		Text^?	Ontology^?
Gene^?
	Named Gene •LOW		24
QTL^?
	Bi-Parental QTL	77	332
	GWAS QTL	3	18
Germplasm Collections^?
Parentage
	Uniform Field Trials	3
Publication^?
	Papers	127
Terms Used In This Search^? "Phytoph" A click on one of the terms in the list above will return only exact lexical matches to the selected term. NOTE: Terms in the above list are machine-generated and may or may not return records if clicked.

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Search Results


Phytoph
	QTL Name	LG (GmComposite2003)	Start (cM)	End (cM)
	Phytoph 1-1	F	16.08000	20.56
	Phytoph 1-2	D1b	59.61000	75.94
	Phytoph 2-1	F	16.08003	18.13
	Phytoph 2-2	D1b	75.41000	75.94
	Phytoph 3-1	F	16.08002	20.56
	Phytoph 3-2	D1b	59.61005	75.94
	Phytoph 4-1	F	16.08001	18.13
	Phytoph 4-2	D1b	75.41004	75.94
	Phytoph 5-1	C2	42.36000	112.90
	Phytoph 5-2	E	32.09000	34.20
	Phytoph 5-3	O	49.70000	107.58
	Phytoph 6-1	F	2.23000	3.04
	Phytoph 6-2	D1b	75.29000	75.41
	Phytoph 6-3	D1b	75.94000	76.27
	Phytoph 6-4	A2	100.80000	107.50
	Phytoph 6-5	B1	118.52000	123.95
	Phytoph 6-6	C2	113.38000	113.95
	Phytoph 6-7	C2	107.58000	111.68
	Phytoph 6-8	C2	117.73000	121.26
	Phytoph 7-1	J	37.04000	39.63
	Phytoph 8-1	J	35.83000	41.90
	Phytoph 8-2	I	34.94000	53.14
	Phytoph 8-3	G	8.60000	16.67
	Phytoph 8-4	F	63.68000	71.41
	Phytoph 9-1	H	17.48000	43.68
	Phytoph 9-2	F	18.12000	33.18
	Phytoph 9-3	F	71.41000	74.12
	Phytoph 9-4	B2	55.20000	72.80
	Phytoph 9-5	D2	85.69000	93.77
	Phytoph 9-6	L	64.66000	70.36
	Phytoph 10-1	F	0.00000	5.05
	Phytoph 10-2	F	3.04000	5.56
	Phytoph 10-3	D1b	111.04000	116.34
	Phytoph 11-1	No Positional Data
	Phytoph 11-2	A2	50.50000	52.50
	Phytoph 11-3	No Positional Data
	Phytoph 11-4	No Positional Data
	Phytoph 11-5	No Positional Data
	Phytoph 11-6	No Positional Data
	Phytoph 11-7	No Positional Data
	Phytoph 11-8	No Positional Data
	Phytoph 11-9	No Positional Data
	Phytoph 11-10	No Positional Data
	Phytoph 11-11	No Positional Data
	Phytoph 11-12	No Positional Data
	Phytoph 11-13	No Positional Data
	Phytoph 11-14	No Positional Data
	Phytoph 11-15	No Positional Data
	Phytoph 11-16	No Positional Data
	Phytoph 11-17	No Positional Data
	Phytoph 11-18	No Positional Data
	Phytoph 11-19	F	32.18000	34.18
	Phytoph 11-20	D2	86.66000	88.66
	Phytoph 11-21	F	73.12000	75.12
	Phytoph 11-22	B2	64.55000	66.55
	Phytoph 12-1	F	74.12000	79.91
	Phytoph 12-2	D2	88.01000	93.41
	Phytoph 13-1	L	70.36000	78.23
	Phytoph 13-2	L	97.28000	102.53
	Phytoph 13-3	D1a	75.25000	85.48
	Phytoph 13-4	G	94.83000	96.57
	Phytoph 13-5	G	107.11000	116.76
	Phytoph 14-1	D1a	66.84000	77.69
	Phytoph 14-2	F	49.77000	51.77
	Phytoph 14-3	G	49.77000	100.60
	Phytoph 14-4	D1b	6.42000	34.80
	Phytoph 14-5	N	22.50000	34.54
	Phytoph 14-6	C1	12.71000	26.95
	Phytoph 14-7	C1	53.08000	77.02
	Phytoph 14-8	M	36.71000	63.37
	Phytoph 14-9	E	9.83000	28.75
	Phytoph 14-10	I	49.45000	60.73
	Phytoph 15-1	L	70.33000	76.82
	Phytoph 15-2	L	98.33000	104.51
	Phytoph 15-3	D1a	77.21000	80.27
	Phytoph 15-4	G	94.69000	95.20
	Phytoph 15-5	G	99.03000	105.68

Bi-Parental QTL Related by Ontology
	Asian Soybean Rust
		Asian Soybean Rust 1-1
		Asian Soybean Rust 2-1
		Asian Soybean Rust 2-2
		Asian Soybean Rust 2-3
		Asian Soybean Rust 2-4
	BSR
		BSR 1-1
		BSR 1-2
		BSR 2-1
		BSR 3-1
		BSR 4-1
		BSR 5-1
		BSR 5-2
		BSR 6-1
		BSR 6-2
		BSR 6-3
		BSR 6-4
		BSR 6-5
		BSR 6-6
		BSR 6-7
		BSR 6-8
		BSR 6-9
		BSR 6-10
	Fusarium lesion length
		Fusarium lesion length 1-1
		Fusarium lesion length 1-2
		Fusarium lesion length 1-3
		Fusarium lesion length 1-4
		Fusarium lesion length 1-5
	Fusarium root rot
		Fusarium root rot 1-1
		Fusarium root rot 1-2
		Fusarium root rot 1-3
	Phomopsis seed decay
		Phomopsis seed decay 1-1
		Phomopsis seed decay 2-1
		Phomopsis seed decay 3-1
		Phomopsis seed decay 3-2
		Phomopsis seed decay 4-1
		Phomopsis seed decay 4-2
	Phytoph
		Phytoph 1-1
		Phytoph 1-2
		Phytoph 2-1
		Phytoph 2-2
		Phytoph 3-1
		Phytoph 3-2
		Phytoph 4-1
		Phytoph 4-2
		Phytoph 5-1
		Phytoph 5-2
		Phytoph 5-3
		Phytoph 6-1
		Phytoph 6-2
		Phytoph 6-3
		Phytoph 6-4
		Phytoph 6-5
		Phytoph 6-6
		Phytoph 6-7
		Phytoph 6-8
		Phytoph 7-1
		Phytoph 8-1
		Phytoph 8-2
		Phytoph 8-3
		Phytoph 8-4
		Phytoph 9-1
		Phytoph 9-2
		Phytoph 9-3
		Phytoph 9-4
		Phytoph 9-5
		Phytoph 9-6
		Phytoph 10-1
		Phytoph 10-2
		Phytoph 10-3
		Phytoph 11-1
		Phytoph 11-2
		Phytoph 11-3
		Phytoph 11-4
		Phytoph 11-5
		Phytoph 11-6
		Phytoph 11-7
		Phytoph 11-8
		Phytoph 11-9
		Phytoph 11-10
		Phytoph 11-11
		Phytoph 11-12
		Phytoph 11-13
		Phytoph 11-14
		Phytoph 11-15
		Phytoph 11-16
		Phytoph 11-17
		Phytoph 11-18
		Phytoph 11-19
		Phytoph 11-20
		Phytoph 11-21
		Phytoph 11-22
		Phytoph 12-1
		Phytoph 12-2
		Phytoph 13-1
		Phytoph 13-2
		Phytoph 13-3
		Phytoph 13-4
		Phytoph 13-5
		Phytoph 14-1
		Phytoph 14-2
		Phytoph 14-3
		Phytoph 14-4
		Phytoph 14-5
		Phytoph 14-6
		Phytoph 14-7
		Phytoph 14-8
		Phytoph 14-9
		Phytoph 14-10
		Phytoph 15-1
		Phytoph 15-2
		Phytoph 15-3
		Phytoph 15-4
		Phytoph 15-5
	Rhizoc root and hypocot rot
		Rhizoc root and hypocot rot 1-1b
		Rhizoc root and hypocot rot 1-2b
		Rhizoc root and hypocot rot 1-3b
	SDS
		SDS 1-1
		SDS 1-2
		SDS 1-3
		SDS 1-4
		SDS 2-1
		SDS 2-2
		SDS 2-3
		SDS 2-4
		SDS 2-5
		SDS 2-6
		SDS 2-7
		SDS 2-8
		SDS 3-1
		SDS 3-2
		SDS 3-3
		SDS 3-4
		SDS 4-1
		SDS 4-2
		SDS 4-3
		SDS 5-1
		SDS 5-2
		SDS 6-1
		SDS 6-2
		SDS 7-1
		SDS 7-2
		SDS 7-3
		SDS 7-4
		SDS 7-5
		SDS 7-6
		SDS 8-1
		SDS 8-2
		SDS 8-3
		SDS 9-1
		SDS 9-2
		SDS 9-3
		SDS 11-1
		SDS 11-2
		SDS 11-3
		SDS 11-4
		SDS 11-5
		SDS 12-1
		SDS 13-1
		SDS 13-2
		SDS 13-3
		SDS 13-4
		SDS 13-5
		SDS 13-6
		SDS 13-7
		SDS 13-8
		SDS 13-9
		SDS 13-10
		SDS 13-11
		SDS 13-12
		SDS 13-13
		SDS 13-14
		SDS 13-15
		SDS 14-1
		SDS 14-2
		SDS 14-3
		SDS 14-4
		SDS 14-5
		SDS 14-6
		SDS 14-7
		SDS 14-8
		SDS 14-9
		SDS 14-10
		SDS 14-11
		SDS 14-12
		SDS 14-13
		SDS 15-1
		SDS 15-2
		SDS 15-3
		SDS 15-4
		SDS 15-5
		SDS 15-6
		SDS 15-7
		SDS 15-8
		SDS 15-9
		SDS 16-1
		SDS 16-2
		SDS 16-3
		SDS 16-4
		SDS 16-5
		SDS 16-6
		SDS 16-7
		SDS 16-8
		SDS 17-1
		SDS 17-2
		SDS 17-3
		SDS 18-1
		SDS 18-2
		SDS 18-3
		SDS 19-1
		SDS 19-2
		SDS disease severity 20-1
		SDS disease index 20-2
		SDS disease incidence 20-3
		SDS disease incidence 20-4
		SDS disease index 21-1
		SDS disease index 21-2
		SDS disease index 21-3
		SDS disease index 21-4
		cqSDS-001
	Sclero
		Sclero 1-1
		Sclero 1-2
		Sclero 1-3
		Sclero 1-4
		Sclero 1-5
		Sclero 1-6
		Sclero 1-7
		Sclero 1-8
		Sclero 2-1
		Sclero 2-2
		Sclero 2-3
		Sclero 2-4
		Sclero 2-5
		Sclero 2-6
		Sclero 2-7
		Sclero 2-8
		Sclero 2-9
		Sclero 2-10
		Sclero 2-11
		Sclero 2-12
		Sclero 2-13
		Sclero 2-14
		Sclero 2-15
		Sclero 2-16
		Sclero 2-17
		Sclero 2-18
		Sclero 2-19
		Sclero 2-20
		Sclero 2-21
		Sclero 2-22
		Sclero 2-23
		Sclero 2-24
		Sclero 3-1
		Sclero 3-2
		Sclero 3-3
		Sclero 3-4
		Sclero 3-5
		Sclero 3-6
		Sclero 3-7
		Sclero 3-8
		Sclero 3-9
		Sclero 3-10
		Sclero 3-11
		Sclero 3-12
		Sclero 3-13
		Sclero 3-14
		Sclero 3-15
		Sclero 3-16
		Sclero 3-17
		Sclero 3-18
		Sclero 3-19
		Sclero 4-1
		Sclero 4-2
		Sclero 4-3
		Sclero 4-4
		Sclero 4-5
		Sclero 4-6
		Sclero 4-7
		Sclero 4-8
		Sclero 4-9
		Sclero 4-10
		Sclero 4-11
		Sclero 5-1
		Sclero 5-2
		Sclero 5-3
		Sclero 5-4
		Sclero 5-5
		Sclero 5-6
		Sclero 5-7
		Sclero 5-8
		Sclero 5-9
		Sclero 5-10
		Sclero 5-11
		Sclero 5-12
		Sclero 5-13
		Sclero 5-14
		Sclero 5-15
		Sclero 5-16
		Sclero 6-1
		Sclero 6-2
		Sclero 6-3
		Sclero 6-4
		Sclero 6-5
		Sclero 6-6
		Sclero 6-7
		Sclero 6-8
		Sclero 6-9
		Sclero 6-10
		Sclero 6-11
		Sclero 6-12
		Sclero 6-13
		Sclero 7-1
		Sclero 7-2
		Sclero 7-3
		Sclero 8-1
		Sclero 8-2
		Sclero 8-3
		Sclero 9-1
		Sclero 9-2
		Sclero 9-3
		Sclero 9-4
		Sclero 9-5
		Sclero 10-1
		Sclero 10-2
		Sclero 10-3
		Sclero 10-4
		Sclero 10-5
		Sclero 10-6
		Sclero 10-7
		Sclero 10-8
		Sclero 10-9
		Sclero 10-10
		Sclero 10-11

GWAS QTL
	Phytoph
		Phytoph 1
		Phytoph 2
		Phytoph 3

GWAS QTL Related by Ontology
	Asian Soybean Rust
		Asian Soybean Rust 1
	BSR
		BSR 1
	Diaporthe Stem Canker
		Diaporthe stem canker 1
	Phytoph
		Phytoph 1
		Phytoph 2
		Phytoph 3
	Pythium Root Rot
		Pythium root rot 1
		Pythium root rot 2
	Sclero
		Sclero 1
		Sclero 2
		Sclero 3
		Sclero 4
		Sclero 5
		Sclero5
	SDS
		SDS 1
		SDS 2
	SDS Dry Matter Retention
		SDS dry matter retention 1
	SDS Root Retention
		SDS root retention 1

Genes Related by Ontology
	PGIP1
	PGIP2
	PGIP3
	PGIP4
	Rps1-k-1
	Rps1-k-2
	Rps11
	Rps12
	Rps6
	Rps7
	Rps8
	RpsGZ
	RpsHC18
	RpsHN
	RpsJS
	RpsQ
	RpsSi
	RpsUN1
	RpsWY
	RpsX
	RpsYB30
	RpsYD29
	RpsYu25
	RpsZS18

Uniform Trial Parentage Records
	Amsoy Phytophthora 255
	AP 200
	PI 548692

Papers
	Ablett et al. 1996 "RCAT Columbus soybean."
	Abney et al. 1997 "New races of Phytophthora sojae with Rps1-d virulence."
	Anderson and Buzzell 1992 "Inheritance and linkage of the Rps7 gene for resistance to phytophthora rot of soybean."
	Bernard and Shannon 1980 "Registration of Franklin soybean: (Reg. No. 144) Cultivars."
	Bernardi et al. 1995 "Register of Australian oilseed cultivars: Glycine max (L.) Merr. (soybean) cv. Banjalong, Reg. No. AROC4-2/27, registered 17 January 1994."
	Bhattacharyya et al. 1997 "A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that confers race-specific resistance of soybean to Phytophthora sojae."
	Burnham et al. 2002 "Genetic Diversity Patterns among Phytophthora Resistant Soybean Plant Introductions Based on SSR Markers"
	Burnham et al. 2003 "Quantitative traitl oci for partial resistance to Phytophthora sojae in soybean"
	Burnham et al. 2003a "Rps8, A New Locus in Soybean for Resistance to Phytophthora sojae"
	Burnham et al. 2003b "Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in Soybean"
	Cahill et al. 2002 "Microtubule dynamics in compatible and incompatible interactions of soybean hypocotyl cells with Phytophthora sojae"
	Chamnanpunt et al. 2001 "High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae"
	Cheng et al. 2017 "Fine mapping of a Phytophthora-resistance gene RpsWY in soybean (Glycine max L.) by high-throughput genome-wide sequencing"
	Cheng et al. 2018 "The bHLH transcription factor GmPIB1 facilitates resistance to Phytophthora sojae in Glycine max."
	Cianzio et al. 1991A "Registration of 'Archer' soybean."
	Cianzio et al. 1991B "Registration of A20 soybean germplasm resistant to brown stem rot, soybean cyst nematode, and iron deficiency chlorosis."
	Cornelious et al. 2005 "Identification of QTLs underlying water-logging tolerance in soybean"
	Cui et al. 2019A "GmWRKY40, a member of the WRKY transcription factor genes identified from Glycine max L., enhanced the resistance to Phytophthora sojae"
	Demirbas et al. 2001 "Simple Sequence Repeat Markers Linked to the Soybean Rps Genes for Phytophthora Resistance"
	Diers et al. 1992D "Mapping phytophthora resistance loci in soybean with restriction fragment length polymorphism markers."
	Dorrance and Schmitthenner 2000 "New sources of resistance to Phytophthora sojae in the soybean plant introductions."
	Dorrance et al. 2003A "Pathogenic diversity of Phytophthora sojae in Ohio soybean fields"
	Dorrance et al. 2003B "Effect of partial resistance on phytophthora stem rot incidence and yield of soybean in Ohio"
	Drenth et al. 1996 "The evolution of races of Phytophthora sojae in Australia."
	Ellis et al. 2012 "Identification of soybean genotypes resistant to Fusarium graminearum and genetic mapping of resistance quantitative trait loci in the cultivar Conrad"
	Faris et al. 1989 "The systematics of Phytophthora sojae and P. megasperma."
	Fioritto et al. 1997 "Registration of 'Flint' soybean."
	Foerster et al. 1994 "Phytophthora sojae races have arisen by clonal evolution and by rare outcrosses."
	Gardner et al. 2001 "Physical Map Location of the Rps1-k Allele in Soybean"
	Gijzen et al. 1996 "Temperature induced susceptibility to Phytophthora sojae in soybean isolines carrying different Rps genes."
	Glover and Scott 1998 "Heritability and phenotypic variation of tolerance to phytophthora root rot of soybean."
	Goa et al. 2007 "Two Classes of Highly Similar Coiled Coil-Nucleotide Binding-Leucine Rich Repeat Genes Isolated from the Rps1-k Locus Encode Phytophthora Resistance in Soybean"
	Gordon et al. 2006 "Rps8 Maps to a Resistance Gene Rich Region on Soybean Molecular Linkage Group F"
	Graham and Graham 1994 "Wound-associated competency factors are required for the proximal cell responses of soybean to the Phytophthora sojae wall glucan elicitor."
	Graham et al. 2002A "Organization, expression and evolution of a disease resistance gene cluster in soybean"
	Han et al. 2008 "Mapping QTL tolerance to Phytophthora root rot in soybean using microsatellite and RAPD/SCAR derived markers"
	Hansen and Maxwell 1991 "Species of the Phytophthora megasperma complex"
	Hegstad et al. 1996 "Pod inoculation technique with Phytophthora sojae to evaluate soybean populations for RPS alleles in field plantings."
	Hoffman et al. 1999B "Isolation of ethylene-insensitive soybean mutants that are altered in pathogen susceptibility and gene-for-gene disease resistance."
	Jenks et al. 1999 "Genetic analysis of phytophthora rot resistance in the soybean PI 567.496."
	Jeong et al. 2001 "Diversity and evolution of a non-TIR-NBS sequence family that clusters to a chromosomal 'hotspot' for disease resistance genes in soybean"
	Jiang et al. 2020 "Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing"
	Kasuga et al. 1997 "High resolution genetic and physical mapping of molecular markers linked to the Phytophthora resistance gene Rps1-k in soybean"
	Kaufmann and Gerdemann 1958 "Root and stem rot of soybean caused by Phytophthora sojae N. sp."
	Kilen and Hartwig 1995 "Registration of soybean germplasm lines resistant to stem canker and phytophthora rot: D85-10404 and D85-10412."
	Kilen and Lambert 1994 "Registration of D89-9121 soybean germplasm line resistant to foliar feeding insects, phytophthora rot, and stem canker"
	Kilen and Young 1996 "Registration of D93-8664 soybean germplasm line resistant to phytophthora rot and soybean cyst nematode races 3 and 14."
	Kilen and Young 2000 "Registration of D95-5246 soybean germplasm line resistant to phytophthora rot and soybean cyst nematode races 3 and 14."
	Kosslak et al. 1996 "Partial resistance to root-borne infection by Phytophthora sojae in three allelic necrotic root mutants in soybean."
	Kosslak et al. 1997 "Programmed cell death in the root cortex of soybean root necrosis mutants"
	Lee et al. 2013 "Novel quantitative trait loci for partial resistance to Phytophthora sojae in soybean PI 398841"
	Leitz et al. 1999 "Inheritance of resistance to Phytophthora sojae in the soybean PI 567574A"
	Leitz et al. 2000 "Races of Phytophthora sojae on soybean in Illinois"
	Li et al. 2010 "Pyramided QTL underlying tolerance to Phytophthora root rot in mega-environments from soybean cultivars Conrad and Hefeng 25"
	Li et al. 2016 "Genetic mapping and development of co-segregating markers of RpsQ, which provides resistance to Phytophthora sojae in soybean"
	Lin et al. 2013 "Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI 567139B"
	Lin et al. 2013 "Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI 567139B"
	Lin et al. 2021 "Molecular mapping of quantitative disease resistance loci for soybean partial resistance to Phytophthora sansomeana"
	Lindermayr et al. 2002A "Divergent members of a soybean (Glycine max L.) 4 coumarate:coenzyme A ligase gene family Primary structures, catalytic properties, and differential expression"
	Liu et al. 2001A "The matrix metalloproteinase gene GmMMP2 is activated in response to pathogenic infections in soybean"
	Liu et al. 2021 "The 26S proteasome regulatory subunit GmPSMD promotes resistance to Phytophthora sojae in soybean."
	Lohnes and Schmitthenner 1997 "Position of the phytophthora resistance gene Rps7 on the soybean molecular map."
	MacGregor et al. 2002 "Genetic and physical mapping of Avr1a in Phytophthora sojae"
	McBlain and Schmitthenner "Evaluations of reccurrent selection for Phytophthora tolerance."
	McBlain et al. 1990A "Registration of 'Resnik' soybean."
	McBlain et al. 1990B "Registration of 'Flyer' soybean."
	Miller et al. 1997 "Distribution of Phytophthora spp. in field soils determined by immunoassay."
	Mohr and Cahill 2001 "Relative roles of glyceollin, lignin and the hypersensitive response and the influence of ABA in compatible and incompatible interactions of soybeans with Phytophthora sojae"
	Morris et al. 1998 "Chemotropic and contact responses of Phytophthora sojae hyphae to soybean isoflavonoids and artificial substrates."
	Nguyen et al. 2012 "Mapping of quantitative trait loci associated with resistance to Phytophthora sojae and flooding tolerance in soybean"
	Nickell et al. 1996A "Registration of 'Cisne' soybean."
	Nickell et al. 1996B "Registration of 'Iroquois' soybean."
	Nickell et al. 1997 "Registration of LN92-12033 and LN92-12054 soybean germplasm lines near-isogenic for brown stem rot resistance gene Rbs2"
	Niu et al. 2017 "Fine Mapping of a Resistance Gene RpsHN that Controls Phytophthora sojae Using Recombinant Inbred Lines and Secondary Populations"
	Park et al. 2001 "Identification of soybean elicitation competency factor, CF-1, as the soybean Kunitz trypsin inhibitor"
	Ping et al. 2016 "Identification and molecular mapping of Rps11, a novel gene conferring resistance to Phytophthora sojae in soybean"
	Polzin et al. 1994 "Integration of Rps2, Rmd, and Rj2 into linkage group J of the soybean molecular map."
	Qin et al. 2017a "Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V"
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Help With Searching

Results of a search at SoyBase are presented in two complementary ways.

Text match
- The user-submitted search term is used to find exact lexical matches to the name or description of data objects in SoyBase (QTL, genes, etc.). If an exact match is not found, and when the search term was two or more words, then a further search is done using the individual words. These text-based matches are reported in the Text column of the results table.
Ontology match
- The goal of the ontology search is to identify data objects in SoyBase that are related to the search term but which might not have the exact search word(s) in their name or description. Data in SoyBase are tagged using a soybean-specific ontology termed a SOYnumber (SOY#). The user-submitted search term is used to search this SoyBase ontology for an exact match. If an exact match is not found, and when the search term was two or more words, the individual words are used in an additional search. Once a match is found its SOY# is used to traverse the ontology tree to identify related terms. These terms are then used to find SoyBase objects that are related to those directly identified by the search term. These ontology-based matches are reported in the Ontology column of the results table.
  
  Occasionally unrelated SoyBase data objects will be reported in the Ontology-based results along with the correctly identified ones. This is an unavoidable consequence of the the way we have structured the underlying trait, structure and development ontologies at SoyBase. For example a search for 'protein' also returns 'oil'-related objects since both are seed components.

Data Category	Search Was Performed Against
Genetic Marker	Genetic Markers (SNPs, SSRs, etc.).
Gene	Gene records (ex. Glyma.15g026400, Fad2-1).
QTL	Bi-Parental QTL and GWAS QTL collections.
Germplasm Collections	The Induced Mutant and Uniform Field Trial records.
Publications	Paper records and abstracts held within the Soybase data set.
Sitemap, News & Tutorials	SoyBase Sitemap, News archive, Upcoming meetings and Tutorials.

As an example of how these two searching capabilities can be helpful, a search for 'oil' will return those QTL that contain the word 'oil' in their name ('Seed oil', 'Seed oil to protein ratio', etc.) in the QTL line of the Text column. The Ontology column will contain these QTL along with the related QTL 'Seed palmitate', 'Seed oleic', etc.

Note: Because of the idiosyncratic ways that authors name phenotypic and developmental traits it is always advisable to look through the Ontology-based results, even when the submitted search term seems unambiguous. This can reveal additional SoyBase objects that might have been missed using exact text matching.

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Help With Searching

Text match

Ontology match