SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

SDS 18-3
Parent 1:A95-684043
Parent 2:LS94-3207
Intervals associated:ss107926758Đss107912828
Interval length:8.3
Interval LOD score:2.3
Trait name:Reaction to Fusarium solani f sp glycines infection

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000439

     
Other related QTL's
SCN

Other names for the QTL
SDS-3

References for the QTL
Swaminathan et al. 2018bMapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations 
Theor Appl Genet 2018, 131:1047-1062

     
Maps containing SDS 18-3
MapLGStartEnd
GmComposite2003_K K47.3055.50See this QTL region in Sequence Browser

Loci positively associated with the QTL
ss107926758Parent_1SCN Resistance
ss107926758Parent_2SCN and SDS Resistance
ss107926758Phenotypic_R24.6
ss107926758Additive_effect-0.11

Population types used in identification of the QTL
F7 RIL

Parent trait values associated with the QTL
ParentTrait
A95-684043SCN Resistance
LS94-3207SCN and SDS Resistance

Other QTLs studied
SDS 18-1
SDS 18-2

Loci associated with the QTL
ss107926758
ss107912828

Methods used to identify the QTL
Kosambi
MAPMAKER 2.0
Qgene

Comments about the QTL
The data comes from the parental line AX19286 in regards to sudden death syndrome. QTL associated markers were approximately placed on the SoyBase Composite2003 genetic map by BLASTing the markerŐs sequence against the Wm82.a2 genome, identifying the nearest genetically mapped markers on each side of the BLAST hit, and interpolating the markerŐs position on the genetic map to a similar relative position. SCN is caused by the nematode Heterodera glycines.






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo