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GWAS Report for Asian Soybean Rust 1

Experimental Details

Number of germplasm analyzed	2,000
Number of loci tested	42,449
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Characterization of Disease Resistance Loci in the USDA Soybean Germplasm Collection using Genome-wide Association Studies
(Chang et al. 2016a)

Chang et al. Phytopathology 2016, 106(10):1139-1151
10.1094/PHYTO-01-16-0042-FI

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001472
TO	TO:0000439

Other traits reported in this paper

• Bacterial pustule 1
• BSR 1
• Diaporthe stem canker 1
• SDS 2
• Reniform nematode 1
• SCN 1
• Bean pod mottle virus 1
• Peanut mottle virus 1
• Soybean mosaic virus 1
• Phytoph 3

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	Candidate gene	Chromosome	Linkage Group
Asian Soybean Rust 1-g1	Soybean rust	ss715620259	Glyma15g14371	Gm15	E
Asian Soybean Rust 1-g2	Soybean rust	ss715632290	Glyma18g51520	Gm18	G

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