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GWAS Report for Peanut mottle virus 1

Experimental Details

Number of germplasm analyzed	2,000
Number of loci tested	42,449
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Characterization of Disease Resistance Loci in the USDA Soybean Germplasm Collection using Genome-wide Association Studies
(Chang et al. 2016a)

Chang et al. Phytopathology 2016, 106(10):1139-1151
10.1094/PHYTO-01-16-0042-FI

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001499
GO	GO:0009615
TO	TO:0000148

Other traits reported in this paper

• Bacterial pustule 1
• BSR 1
• Diaporthe stem canker 1
• SDS 2
• Asian Soybean Rust 1
• Reniform nematode 1
• SCN 1
• Bean pod mottle virus 1
• Soybean mosaic virus 1
• Phytoph 3

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	Candidate gene	Chromosome	Linkage Group
Peanut mottle virus 1-g1	ss715578589	Glyma01g02171	Gm01	D1a
Peanut mottle virus 1-g2	ss715586831	Glyma03g05135	Gm03	N
Peanut mottle virus 1-g3	ss715613483	Glyma12g09990	Gm12	H
Peanut mottle virus 1-g4	ss715614803	Glyma13g24970	Gm13	F

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Click Here to View Full List of GWAS QTL