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GWAS Report for Sclero 5

Experimental Details

Number of germplasm analyzed	101
Number of loci tested	8397
Platform name	GBS
Platform details	IGST-GBS

Publication for This Experiment

Association mapping of QTLs for sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach
(Iquira et al. 2015)

BMC Plant Biology 2015 15(5)
https://doi.org/10.1186/s12870-014-0408-y

Supplemental data for the GWAS QTL
Significant SNPs, All SNPs, Germplasm names

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001479
TO	TO:0000439

Other traits reported in this paper

• Sclero5

Comments

SNPs and InDels were identified using the IGST-GBS variant pipeline

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Chromosome	Linkage Group
Sclero5-g2	Gm08_7606596	Gm08_7606596	16	3.91E-05	Gm8
Sclero5-g3	Gm08_7650317	Gm08_7650317	16	3.91E-05	Gm8
Sclero5-g4	Gm20_33511401	Gm20_33511401	15	5.30E-05	Gm20
Sclero5-g5	Gm15_47443434	Gm15_47443434	12	7.30E-05	Gm15
Sclero5-g6	Gm02_2385261	Gm02_2385261	13	2.44E-04	Gm02
Sclero5-g7	Gm10_31766279	Gm10_31766279	13	2.42E-04	Gm10
Sclero5-g8	Gm10_2829577	Gm10_2829577	13	3.12E-04	Gm10
Sclero5-g9	Gm03_3012147	Gm03_3012147	12	5.26E-04	Gm03
Sclero5-g10	Gm14_4612686	Gm14_4612686	12	5.44E-04	Gm14
Sclero5-g11	Gm15_12233432	Gm15_12233432	12	4.40E-04	Gm15
Sclero5-g12	Gm20_42688433	Gm20_42688433	12	5.30E-04	Gm20

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Click Here to View Full List of GWAS QTL