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GWAS Report for Sclero 2
Experimental Details
Number of germplasm analyzed | 420 |
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Number of loci tested | 68,242 |
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Platform name | GBS libraries |
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Platform details | GBS v2 SNP-calling pipeline |
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Publication for This Experiment
Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil
(Wei et al. 2017a)
BMC Genomics 2017, 18:849
10.1186/s12864-017-4160-1
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | R2 | Chromosome | Linkage Group |
Sclero 2-g1.1 | S18_14,327,556 | ss715628999 | 4.41 | Gm18 | G |
Sclero 2-g1.2 | S18_14,327,607 | ss715628999 | 4.15 | Gm18 | G |
Sclero 2-g2 | S1_36,783,951 | Gm01:36783951 | 3.98 | Gm01 | D1a |
Sclero 2-g3 | S1_36,497,505 | Gm01:36497505 | 3.91 | Gm01 | D1a |
Sclero 2-g4 | S1_35,474,053 | Gm01:35474053 | 3.75 | Gm01 | D1a |
Sclero 2-g5 | S11_6,493,121 | Gm11:6493121 | 3.72 | Gm11 | B1 |
Sclero 2-g6 | S1_35,045,463 | Gm01:35045463 | 3.69 | Gm01 | D1a |
Sclero 2-g7 | S1_36,006,734 | Gm01:36006734 | 3.67 | Gm01 | D1a |
Sclero 2-g8 | S18_14,517,407 | Gm18:14517407 | 3.62 | Gm18 | G |
Sclero 2-g9 | S18_14,517,362 | Gm18:14517362 | 3.62 | Gm18 | G |
Sclero 2-g10 | S1_36,045,483 | Gm01:36045483 | 3.42 | Gm01 | D1a |
Sclero 2-g11.1 | S18_14,282,760 | ss715628993 | 3.38 | Gm18 | G |
Sclero 2-g11.2 | S18_14,282,812 | ss715628993 | 3.38 | Gm18 | G |
Sclero 2-g11.3 | S18_14,282,806 | ss715628993 | 3.38 | Gm18 | G |
Sclero 2-g12 | S1_35,152,187 | Gm01:35152187 | 3.35 | Gm01 | D1a |
Sclero 2-g13 | S19_1,289,850 | Gm19:1289850 | 3.32 | Gm19 | L |
Sclero 2-g14 | S18_14,324,249 | Gm18:14324249 | 3.27 | Gm18 | G |
Sclero 2-g15 | S18_14,324,245 | Gm18:14324245 | 3.27 | Gm18 | G |
Sclero 2-g16 | S18_14,334,212 | Gm18:14334212 | 3.20 | Gm18 | G |
Sclero 2-g17 | S9_32,113,409 | Gm09:32113409 | 2.25 | Gm09 | K |
Sclero 2-g18 | S4_7,210,961 | Gm04:7210961 | 2.27 | Gm04 | C1 |
Sclero 2-g19 | S16_3,111,366 | ss715624385 | 2.09 | Gm16 | J |
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