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Data Category^?		Search Results
Data Category^?		Text^?	Ontology^?
QTL^?
	Bi-Parental QTL	104	204
	GWAS QTL	2	24
Germplasm Collections^?
Parentage
	Uniform Field Trials	4
Publication^?
	Papers	1
Terms Used In This Search^? "SDS disease index" "sds" "disease" "sdsdiseaseindex" "sds_disease_index" "sodium dodecyl sulfate" "Reaction to Fusarium solani f sp glycin..." A click on one of the terms in the list above will return only exact lexical matches to the selected term. NOTE: Terms in the above list are machine-generated and may or may not return records if clicked.

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Search Results


cqSDS
	QTL Name	LG (GmComposite2003)	Start (cM)	End (cM)
	cqSDS-001	D2	76.69000	85.15
SDS
	QTL Name	LG (GmComposite2003)	Start (cM)	End (cM)
	SDS 1-1	C2	0.00000	22.90
	SDS 1-2	N	123.70000	138.80
	SDS 1-3	C2	22.90000	50.85
	SDS 1-4	N	138.80000	148.90
	SDS 2-1	G	6.20000	36.30
	SDS 2-2	G	0.00000	1.90
	SDS 2-3	G	66.95000	73.90
	SDS 2-4	G	36.30000	67.00
	SDS 2-5	C2	0.00000	22.90
	SDS 2-6	C2	22.90000	50.90
	SDS 2-7	N	123.70000	138.80
	SDS 2-8	N	138.80000	148.90
	SDS 3-1	G	6.20000	36.30
	SDS 3-2	G	0.00000	1.90
	SDS 3-3	G	36.30000	67.00
	SDS 3-4	G	66.95000	73.90
	SDS 4-1	G	6.50000	8.50
	SDS 4-2	G	57.50000	85.30
	SDS 4-3	G	6.50000	8.50
	SDS 5-1	G.1	8.50000	10.50
	SDS 5-2	A2	28.80000	63.40
	SDS 6-1	G	8.50000	10.50
	SDS 6-2	G	4.25000	5.25
	SDS 7-1	G	0.00000	5.90
	SDS 7-2	G	17.20000	29.30
	SDS 7-3	G	29.30000	47.10
	SDS 7-4	G	66.80000	103.30
	SDS 7-5	C2	26.50000	45.10
	SDS 7-6	I	7.50000	20.00
	SDS 8-1	G	-1.00000	1.00
	SDS 8-2	C2	120.27000	122.27
	SDS 8-3	N	44.14000	46.14
	SDS 8-4
	SDS 9-1	L	77.23000	79.23
	SDS 9-2	L	91.00000	93.00
	SDS 9-3	C1	89.72000	91.72
	SDS 11-1	C2	107.58000	117.87
	SDS 11-2	D2	87.66000	92.12
	SDS 11-3	G	0.00000	8.42
	SDS 11-4	G	17.85000	28.35
	SDS 11-5	G	43.77000	51.68
	SDS 12-1	No Positional Data
	SDS 13-1	D1a	29.15000	45.75
	SDS 13-2	O	13.28000	15.06
	SDS 13-3	L	41.00000	49.40
	SDS 13-4	D1b	18.75000	21.44
	SDS 13-5	D1b	30.23000	35.75
	SDS 13-6	C2	30.79000	38.04
	SDS 13-7	A2	2.00000	13.00
	SDS 13-8	B1	5.07000	16.70
	SDS 13-9	G	24.09000	28.03
	SDS 13-10	N	38.20000	42.85
	SDS 13-11	C2	51.50000	57.30
	SDS 13-12	G	24.09000	27.48
	SDS 13-13	A2	14.99000	27.90
	SDS 13-14	C2	17.10000	32.74
	SDS 13-15	C1	57.30000	83.90
	SDS 14-1	D1a	65.28000	75.29
	SDS 14-2	N	38.50000	38.67
	SDS 14-3	N	38.63000	38.67
	SDS 14-4	A1	77.09000	85.57
	SDS 14-5	C2	119.20000	120.79
	SDS 14-6	C2	118.95000	120.79
	SDS 14-7	K	46.38000	46.67
	SDS 14-8	O	23.36000	33.69
	SDS 14-9	F	3.04000	3.07
	SDS 14-10	B2	19.87000	52.03
	SDS 14-11	E	40.11000	42.76
	SDS 14-12	J	31.57000	32.77
	SDS 14-13	L	60.27000	62.27
	SDS 15-1	F	72.97000	78.05
	SDS 15-2	A2	14.99000	51.86
	SDS 15-3	A2	51.86000	58.43
	SDS 15-4	D1b	51.86000	58.43
	SDS 15-5	I	63.33000	113.76
	SDS 15-6	I	55.09000	65.62
	SDS 15-7	J	27.99000	38.70
	SDS 15-8	A1	57.79000	78.44
	SDS 15-9	I	50.11000	63.33
	SDS 16-1	K	45.74000	50.93
	SDS 16-2	M	103.98000	133.83
	SDS 16-3	A2	14.99000	67.86
	SDS 16-4	I	22.84000	35.34
	SDS 16-5	C2	121.26000	126.23
	SDS 16-6	C2	97.83000	121.26
	SDS 16-7	O	51.00000	53.66
	SDS 16-8	F	74.12000	78.05
	SDS 17-1	I	35.50000	37.50
	SDS 17-2	F	17.20000	34.70
	SDS 17-3	D2	6.55000	19.30
	SDS 18-1	I	35.90000	37.49
	SDS 18-2	L	70.10000	95.50
	SDS 18-3	K	47.30000	55.50
	SDS 19-1	O	56.02000	58.02
	SDS 19-2	D2	78.23000	80.23
	SDS disease severity 20-1	No Positional Data
	SDS disease index 20-2	No Positional Data
	SDS disease incidence 20-3	H	45.30000	59.70
	SDS disease incidence 20-4	No Positional Data
	SDS disease index 21-1	B2	40.59000	67.73
	SDS disease index 21-2	E	34.20000	56.27
	SDS disease index 21-3	I	27.98000	36.40
	SDS disease index 21-4	C1	81.02000	85.37

Bi-Parental QTL Related by Ontology
	BSR
		BSR 1-1
		BSR 1-2
		BSR 2-1
		BSR 3-1
		BSR 4-1
		BSR 5-1
		BSR 5-2
		BSR 6-1
		BSR 6-2
		BSR 6-3
		BSR 6-4
		BSR 6-5
		BSR 6-6
		BSR 6-7
		BSR 6-8
		BSR 6-9
		BSR 6-10
	Fusarium lesion length
		Fusarium lesion length 1-1
		Fusarium lesion length 1-2
		Fusarium lesion length 1-3
		Fusarium lesion length 1-4
		Fusarium lesion length 1-5
	Fusarium root rot
		Fusarium root rot 1-1
		Fusarium root rot 1-2
		Fusarium root rot 1-3
	Indo soy dwarf virus
		Indo soy dwarf virus 1-1
	Rhizoc root and hypocot rot
		Rhizoc root and hypocot rot 1-1b
		Rhizoc root and hypocot rot 1-2b
		Rhizoc root and hypocot rot 1-3a
	SDS
		SDS 1-1
		SDS 1-2
		SDS 1-3
		SDS 1-4
		SDS 2-1
		SDS 2-2
		SDS 2-3
		SDS 2-4
		SDS 2-5
		SDS 2-6
		SDS 2-7
		SDS 2-8
		SDS 3-1
		SDS 3-2
		SDS 3-3
		SDS 3-4
		SDS 4-1
		SDS 4-2
		SDS 4-3
		SDS 5-1
		SDS 5-2
		SDS 6-1
		SDS 6-2
		SDS 7-1
		SDS 7-2
		SDS 7-3
		SDS 7-4
		SDS 7-5
		SDS 7-6
		SDS 8-1
		SDS 8-2
		SDS 8-3
		SDS 9-1
		SDS 9-2
		SDS 9-3
		SDS 11-1
		SDS 11-2
		SDS 11-3
		SDS 11-4
		SDS 11-5
		SDS 12-1
		SDS 13-1
		SDS 13-2
		SDS 13-3
		SDS 13-4
		SDS 13-5
		SDS 13-6
		SDS 13-7
		SDS 13-8
		SDS 13-9
		SDS 13-10
		SDS 13-11
		SDS 13-12
		SDS 13-13
		SDS 13-14
		SDS 13-15
		SDS 14-1
		SDS 14-2
		SDS 14-3
		SDS 14-4
		SDS 14-5
		SDS 14-6
		SDS 14-7
		SDS 14-8
		SDS 14-9
		SDS 14-10
		SDS 14-11
		SDS 14-12
		SDS 14-13
		SDS 15-1
		SDS 15-2
		SDS 15-3
		SDS 15-4
		SDS 15-5
		SDS 15-6
		SDS 15-7
		SDS 15-8
		SDS 15-9
		SDS 16-1
		SDS 16-2
		SDS 16-3
		SDS 16-4
		SDS 16-5
		SDS 16-6
		SDS 16-7
		SDS 16-8
		SDS 17-1
		SDS 17-2
		SDS 17-3
		SDS 18-1
		SDS 18-2
		SDS 18-3
		SDS 19-1
		SDS 19-2
		SDS disease severity 20-1
		SDS disease index 20-2
		SDS disease incidence 20-3
		SDS disease incidence 20-4
		SDS disease index 21-1
		SDS disease index 21-2
		SDS disease index 21-3
		SDS disease index 21-4
		cqSDS-001
	Seed coat color
		Seed coat color 1-1
		Seed coat color 1-2
		Seed coat color 1-3
		Seed coat color 1-4
		Seed coat color 1-5
		Seed coat color 2-1
		Seed coat color 2-2
		Seed coat color 3-1
		Seed coat color 4-1
	Seed coat cracking
		Seed coat cracking 1-1
		Seed coat cracking 1-2
		Seed coat cracking 2-1
		Seed coat cracking 2-2
		Seed coat cracking 3-1
		Seed coat cracking 3-2
		Seed coat cracking 3-3
		Seed coat cracking 3-4
		Seed coat cracking 3-5
		Seed coat cracking 3-6
		Seed coat cracking 3-7
		Seed coat cracking 3-8
		Seed coat cracking 3-9
		Seed coat cracking 3-10
	Seed coat hardness
		Seed coat hardness 1-1
		Seed coat hardness 1-2
		Seed coat hardness 1-3
		Seed coat hardness 1-4
		Seed coat hardness 1-5
		Seed coat hardness 1-6
		Seed coat hardness 1-7
		Seed coat hardness 2-1
		Seed coat hardness 2-2
		Seed coat hardness 2-3
		Seed coat hardness 2-4
		Seed coat hardness 2-5
		Seed coat hardness 3-1
		Seed coat hardness 3-2
		Seed coat hardness 3-3
	Seed hardness
		Seed hardness 1-1
		Seed hardness 1-2
		Seed hardness 2-1
		Seed hardness 2-2
		Seed hardness 2-3
		Seed hardness 2-4
		Seed hardness 2-5
		Seed hardness 2-6
		Seed hardness 2-7
		Seed hardness 2-8
		Seed hardness 2-9
		Seed hardness 2-10
		Seed hardness 2-11
		Seed hardness 2-12
	Soybean mosaic virus
		Soybean mosaic virus 1-1
		Soybean mosaic virus 1-2
		Soybean mosaic virus 1-3
		Soybean mosaic virus 1-4
		Soybean mosaic virus 1-5
		Soybean mosaic virus 1-6
		Soybean mosaic virus 1-7
		Soybean mosaic virus 1-8
		Soybean mosaic virus 1-9
		Soybean mosaic virus 1-10
		Soybean mosaic virus 1-11
		Soybean mosaic virus 1-12
		Soybean mosaic virus 1-13
		Soybean mosaic virus 1-14
		Soybean mosaic virus 1-15
		Soybean mosaic virus 1-16
		Soybean mosaic virus 1-17
		Soybean mosaic virus 1-18
		Soybean mosaic virus 1-19
	Tobacco ring spot virus
		Tobacco ring spot virus 1-1

GWAS QTL
	SDS
		SDS 1
		SDS 2

GWAS QTL Related by Ontology
	Bacterial Pustule
		Bacterial pustule 1
	Bean Pod Mottle Virus
		Bean pod mottle virus 1
	BSR
		BSR 1
	Hilum Color
		Hilum color 1
		Hilum color 2
	Peanut Mottle Virus
		Peanut mottle virus 1
	SDS
		SDS 1
		SDS 2
	SDS Dry Matter Retention
		SDS dry matter retention 1
	SDS Root Retention
		SDS root retention 1
	Seed Coat Color
		Seed coat color 1
		Seed coat color 3
		Seed coat color 4
		Seed coat color 5
	Seed Coat Cracking
		Seed coat cracking 1
		Seed coat cracking 2
	Seed Coat Luster
		Seed coat luster 1
	Soybean Mosaic Virus
		Soybean mosaic virus 1
		Soybean mosaic virus 2
		Soybean mosaic virus 3
		Soybean mosaic virus 4
		Soybean mosaic virus 5
	Tobacco Ringspot Virus
		Tobacco ringspot virus 1
	Yellow Mosaic Virus
		Yellow Mosaic Virus 1

Uniform Trial Parentage Records
	AR03-163008
	AR03-263051
	AR10SDS
	AR11SDS

Papers
	Njiti et al. 1998 "Resistance to soybean sudden death syndrome and root colonization by Fusarium solani f. sp. glycine in near-isogenic lines."

Help With Searching

Results of a search at SoyBase are presented in two complementary ways.

Text match
- The user-submitted search term is used to find exact lexical matches to the name or description of data objects in SoyBase (QTL, genes, etc.). If an exact match is not found, and when the search term was two or more words, then a further search is done using the individual words. These text-based matches are reported in the Text column of the results table.
Ontology match
- The goal of the ontology search is to identify data objects in SoyBase that are related to the search term but which might not have the exact search word(s) in their name or description. Data in SoyBase are tagged using a soybean-specific ontology termed a SOYnumber (SOY#). The user-submitted search term is used to search this SoyBase ontology for an exact match. If an exact match is not found, and when the search term was two or more words, the individual words are used in an additional search. Once a match is found its SOY# is used to traverse the ontology tree to identify related terms. These terms are then used to find SoyBase objects that are related to those directly identified by the search term. These ontology-based matches are reported in the Ontology column of the results table.
  
  Occasionally unrelated SoyBase data objects will be reported in the Ontology-based results along with the correctly identified ones. This is an unavoidable consequence of the the way we have structured the underlying trait, structure and development ontologies at SoyBase. For example a search for 'protein' also returns 'oil'-related objects since both are seed components.

Data Category	Search Was Performed Against
Genetic Marker	Genetic Markers (SNPs, SSRs, etc.).
Gene	Gene records (ex. Glyma.15g026400, Fad2-1).
QTL	Bi-Parental QTL and GWAS QTL collections.
Germplasm Collections	The Induced Mutant and Uniform Field Trial records.
Publications	Paper records and abstracts held within the Soybase data set.
Sitemap, News & Tutorials	SoyBase Sitemap, News archive, Upcoming meetings and Tutorials.

As an example of how these two searching capabilities can be helpful, a search for 'oil' will return those QTL that contain the word 'oil' in their name ('Seed oil', 'Seed oil to protein ratio', etc.) in the QTL line of the Text column. The Ontology column will contain these QTL along with the related QTL 'Seed palmitate', 'Seed oleic', etc.

Note: Because of the idiosyncratic ways that authors name phenotypic and developmental traits it is always advisable to look through the Ontology-based results, even when the submitted search term seems unambiguous. This can reveal additional SoyBase objects that might have been missed using exact text matching.

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain

Help With Searching

Text match

Ontology match