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GWAS Report for Seed coat cracking 1

Experimental Details

Number of germplasm analyzed	167
Number of loci tested	20046
Platform name	180K Axiom
Platform details	180K Axiom Soya SNP

Publication for This Experiment

High-density linkage map reveals QTL for Type-I seed coat cracking in RIL population of soybean [Glycine max (L.) Merr.]
(Kang et al. 2020)

Euphytica 2020, 216:153
10.1007/s10681-020-02684-w

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001852
PO	PO:0009088
TO	TO:0000838

Comments

Multiple years studied, combined years presented

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Seed coat cracking 1-g1	qSC2-3	12.9	Gm02	D1b
Two years studied, composite QTLs presented. See paper for details
Seed coat cracking 1-g2	qSC6	6.8	Gm06	C2
Two years studied, composite QTLs presented. See paper for details
Seed coat cracking 1-g3	qSC10-2	10.7	Gm10	O
Two years studied, composite QTLs presented. See paper for details
Seed coat cracking 1-g4	qSC12	5.1	Gm12	H
Two years studied, composite QTLs presented. See paper for details
Seed coat cracking 1-g5	qSC19-2	4.1	Gm19	L
Two years studied, composite QTLs presented. See paper for details
Seed coat cracking 1-g6	qSC20	6.3	Gm20	I
Two years studied, composite QTLs presented. See paper for details

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