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GWAS Report for Soybean mosaic virus 5

Experimental Details

Number of germplasm analyzed	279
Number of loci tested	1202
Platform name	SoySNP6k
Platform details	Illumina Infinium SoySNP6K

Publication for This Experiment

Mining of a major QTL and novel genes conferring resistance to SC3 and SC7 strains in soybean
(Chu et al. 2021)

Chu et al. Plant Breeding (2021) 140:851-859
10.1111/pbr.12921

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:00001501

Other traits reported in this paper

• Soybean mosaic virus 4

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	LOD	p-value	Chromosome	Linkage Group
Soybean mosaic virus 5-g1	51.98	9.5 x 10-49	Gm02	D1b
Soybean mosaic virus 5-g2	51.53	1.1. 10-45	Gm02	D1b

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Click Here to View Full List of GWAS QTL