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GWAS Report for Tobacco ringspot virus 1

Experimental Details

Number of germplasm analyzed	697
Number of loci tested	42,449
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect BeadChip

Publication for This Experiment

Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions
(Chang et al. 2016b)

BMC Genomics 2016, 17:153
10.1186/s12864-016-2487-7

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001321
GO	GO:0009615
TO	TO:0000148

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Chromosome	Linkage Group
Tobacco ringspot virus 1-g1	TRSV	ss715581033	0.26	1.68___10_9	Gm02	D1b
Tobacco ringspot virus 1-g2	TRSV	ss715581036	0.26	1.23___10_8	Gm02	D1b
Tobacco ringspot virus 1-g3	TRSV	ss715581043	0.26	1.28___10_8	Gm02	D1b
Tobacco ringspot virus 1-g4	TRSV	ss715601747	0.25	4.60___10_7	Gm08	A2
Tobacco ringspot virus 1-g5	TRSV	ss715581049	0.24	3.76___10_6	Gm02	D1b
Tobacco ringspot virus 1-g6	TRSV	ss715581051	0.24	4.90___10_6	Gm02	D1b
Tobacco ringspot virus 1-g7	TRSV	ss715581052	0.24	5.54___10_6	Gm02	D1b
Tobacco ringspot virus 1-g8	TRSV	ss715581054	0.24	1.22___10_5	Gm02	D1b
Tobacco ringspot virus 1-g9	TRSV	ss715581062	0.24	1.26___10_5	Gm02	D1b
Tobacco ringspot virus 1-g10	TRSV	ss715601789	0.24	4.07___10_5	Gm08	A2

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Click Here to View Full List of GWAS QTL