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GWAS Report for Hilum color 1

Experimental Details

Number of germplasm analyzed	139
Number of loci tested	17172

Publication for This Experiment

Indentification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean
(Sonah et al. 2015a)

Plant Biotechnol J. 2015, 13:211-221
10.1111/pbi.12249

Supplemental data for the GWAS QTL
SNP positions, flanking sequences

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001367
PO	PO:0020063

Other traits reported in this paper

• Flower color 1
• Pubescence color 1
• R8 full maturity 4
• Plant height 4
• Seed weight 6
• Seed oil 5
• Seed protein 4

Comments

QTL were reported as clusters of SNPs; authors provided only the most significant SNP for each QTL.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Chromosome	Linkage Group
Hilum color 1-g1	Hilum colour	FB8480396	0.59	2.07E-12	Gm08	A2
Hilum color 1-g2	Hilum colour	FB42464620	0.54	4.41E-12	Gm09	K

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