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GWAS Report for Seed coat cracking 2

Experimental Details

Number of germplasm analyzed	240
Platform name	SoySNP6K
Platform details	Illumina Infinium BARCSoySNP6K

Publication for This Experiment

Identification and validation of major QTLs associated with low seed coat deficiency of natto soybean seeds (Glycine max L.)
(Zhu et al. 2020)

Zhu et al. 2020, TAG 133:3165-3176
/10.1007/s00122-020-03662-5

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001852
PO	PO:0009088
TO	TO:0000838

Comments

Only Population 1 data presented, Multiple years examined see paper for details

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Seed coat cracking 2-g1	qSCD15	5	Gm15	E
Lowest LOD score used, 2017 values used,Only region provided
Seed coat cracking 2-g2	qSCD20	6.1	Gm20	I
Lowest LOD score used, 2018 values used, Only region provided

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