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Data Category^?		Search Results
Data Category^?		Text^?	Ontology^?
QTL^?
	Bi-Parental QTL	104	111
	GWAS QTL	2	4
Germplasm Collections^?
Parentage
	Uniform Field Trials	4
Publication^?
	Papers	48
Terms Used In This Search^? "SDS" "sodium dodecyl sulfate" "Reaction to Fusarium solani f sp glycin..." A click on one of the terms in the list above will return only exact lexical matches to the selected term. NOTE: Terms in the above list are machine-generated and may or may not return records if clicked.

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Search Results


cqSDS
	QTL Name	LG (GmComposite2003)	Start (cM)	End (cM)
	cqSDS-001	D2	76.69000	85.15
SDS
	QTL Name	LG (GmComposite2003)	Start (cM)	End (cM)
	SDS 1-1	C2	0.00000	22.90
	SDS 1-2	N	123.70000	138.80
	SDS 1-3	C2	22.90000	50.85
	SDS 1-4	N	138.80000	148.90
	SDS 2-1	G	6.20000	36.30
	SDS 2-2	G	0.00000	1.90
	SDS 2-3	G	66.95000	73.90
	SDS 2-4	G	36.30000	67.00
	SDS 2-5	C2	0.00000	22.90
	SDS 2-6	C2	22.90000	50.90
	SDS 2-7	N	123.70000	138.80
	SDS 2-8	N	138.80000	148.90
	SDS 3-1	G	6.20000	36.30
	SDS 3-2	G	0.00000	1.90
	SDS 3-3	G	36.30000	67.00
	SDS 3-4	G	66.95000	73.90
	SDS 4-1	G	6.50000	8.50
	SDS 4-2	G	57.50000	85.30
	SDS 4-3	G	6.50000	8.50
	SDS 5-1	G.1	8.50000	10.50
	SDS 5-2	A2	28.80000	63.40
	SDS 6-1	G	8.50000	10.50
	SDS 6-2	G	4.25000	5.25
	SDS 7-1	G	0.00000	5.90
	SDS 7-2	G	17.20000	29.30
	SDS 7-3	G	29.30000	47.10
	SDS 7-4	G	66.80000	103.30
	SDS 7-5	C2	26.50000	45.10
	SDS 7-6	I	7.50000	20.00
	SDS 8-1	G	-1.00000	1.00
	SDS 8-2	C2	120.27000	122.27
	SDS 8-3	N	44.14000	46.14
	SDS 8-4
	SDS 9-1	L	77.23000	79.23
	SDS 9-2	L	91.00000	93.00
	SDS 9-3	C1	89.72000	91.72
	SDS 11-1	C2	107.58000	117.87
	SDS 11-2	D2	87.66000	92.12
	SDS 11-3	G	0.00000	8.42
	SDS 11-4	G	17.85000	28.35
	SDS 11-5	G	43.77000	51.68
	SDS 12-1	No Positional Data
	SDS 13-1	D1a	29.15000	45.75
	SDS 13-2	O	13.28000	15.06
	SDS 13-3	L	41.00000	49.40
	SDS 13-4	D1b	18.75000	21.44
	SDS 13-5	D1b	30.23000	35.75
	SDS 13-6	C2	30.79000	38.04
	SDS 13-7	A2	2.00000	13.00
	SDS 13-8	B1	5.07000	16.70
	SDS 13-9	G	24.09000	28.03
	SDS 13-10	N	38.20000	42.85
	SDS 13-11	C2	51.50000	57.30
	SDS 13-12	G	24.09000	27.48
	SDS 13-13	A2	14.99000	27.90
	SDS 13-14	C2	17.10000	32.74
	SDS 13-15	C1	57.30000	83.90
	SDS 14-1	D1a	65.28000	75.29
	SDS 14-2	N	38.50000	38.67
	SDS 14-3	N	38.63000	38.67
	SDS 14-4	A1	77.09000	85.57
	SDS 14-5	C2	119.20000	120.79
	SDS 14-6	C2	118.95000	120.79
	SDS 14-7	K	46.38000	46.67
	SDS 14-8	O	23.36000	33.69
	SDS 14-9	F	3.04000	3.07
	SDS 14-10	B2	19.87000	52.03
	SDS 14-11	E	40.11000	42.76
	SDS 14-12	J	31.57000	32.77
	SDS 14-13	L	60.27000	62.27
	SDS 15-1	F	72.97000	78.05
	SDS 15-2	A2	14.99000	51.86
	SDS 15-3	A2	51.86000	58.43
	SDS 15-4	D1b	51.86000	58.43
	SDS 15-5	I	63.33000	113.76
	SDS 15-6	I	55.09000	65.62
	SDS 15-7	J	27.99000	38.70
	SDS 15-8	A1	57.79000	78.44
	SDS 15-9	I	50.11000	63.33
	SDS 16-1	K	45.74000	50.93
	SDS 16-2	M	103.98000	133.83
	SDS 16-3	A2	14.99000	67.86
	SDS 16-4	I	22.84000	35.34
	SDS 16-5	C2	121.26000	126.23
	SDS 16-6	C2	97.83000	121.26
	SDS 16-7	O	51.00000	53.66
	SDS 16-8	F	74.12000	78.05
	SDS 17-1	I	35.50000	37.50
	SDS 17-2	F	17.20000	34.70
	SDS 17-3	D2	6.55000	19.30
	SDS 18-1	I	35.90000	37.49
	SDS 18-2	L	70.10000	95.50
	SDS 18-3	K	47.30000	55.50
	SDS 19-1	O	56.02000	58.02
	SDS 19-2	D2	78.23000	80.23
	SDS disease severity 20-1	No Positional Data
	SDS disease index 20-2	No Positional Data
	SDS disease incidence 20-3	H	45.30000	59.70
	SDS disease incidence 20-4	No Positional Data
	SDS disease index 21-1	B2	40.59000	67.73
	SDS disease index 21-2	E	34.20000	56.27
	SDS disease index 21-3	I	27.98000	36.40
	SDS disease index 21-4	C1	81.02000	85.37

Bi-Parental QTL Related by Ontology
	Fusarium lesion length
		Fusarium lesion length 1-1
		Fusarium lesion length 1-2
		Fusarium lesion length 1-3
		Fusarium lesion length 1-4
		Fusarium lesion length 1-5
	Fusarium root rot
		Fusarium root rot 1-1
		Fusarium root rot 1-2
		Fusarium root rot 1-3
	SDS
		SDS 1-1
		SDS 1-2
		SDS 1-3
		SDS 1-4
		SDS 2-1
		SDS 2-2
		SDS 2-3
		SDS 2-4
		SDS 2-5
		SDS 2-6
		SDS 2-7
		SDS 2-8
		SDS 3-1
		SDS 3-2
		SDS 3-3
		SDS 3-4
		SDS 4-1
		SDS 4-2
		SDS 4-3
		SDS 5-1
		SDS 5-2
		SDS 6-1
		SDS 6-2
		SDS 7-1
		SDS 7-2
		SDS 7-3
		SDS 7-4
		SDS 7-5
		SDS 7-6
		SDS 8-1
		SDS 8-2
		SDS 8-3
		SDS 9-1
		SDS 9-2
		SDS 9-3
		SDS 11-1
		SDS 11-2
		SDS 11-3
		SDS 11-4
		SDS 11-5
		SDS 12-1
		SDS 13-1
		SDS 13-2
		SDS 13-3
		SDS 13-4
		SDS 13-5
		SDS 13-6
		SDS 13-7
		SDS 13-8
		SDS 13-9
		SDS 13-10
		SDS 13-11
		SDS 13-12
		SDS 13-13
		SDS 13-14
		SDS 13-15
		SDS 14-1
		SDS 14-2
		SDS 14-3
		SDS 14-4
		SDS 14-5
		SDS 14-6
		SDS 14-7
		SDS 14-8
		SDS 14-9
		SDS 14-10
		SDS 14-11
		SDS 14-12
		SDS 14-13
		SDS 15-1
		SDS 15-2
		SDS 15-3
		SDS 15-4
		SDS 15-5
		SDS 15-6
		SDS 15-7
		SDS 15-8
		SDS 15-9
		SDS 16-1
		SDS 16-2
		SDS 16-3
		SDS 16-4
		SDS 16-5
		SDS 16-6
		SDS 16-7
		SDS 16-8
		SDS 17-1
		SDS 17-2
		SDS 17-3
		SDS 18-1
		SDS 18-2
		SDS 18-3
		SDS 19-1
		SDS 19-2
		SDS disease severity 20-1
		SDS disease index 20-2
		SDS disease incidence 20-3
		SDS disease incidence 20-4
		SDS disease index 21-1
		SDS disease index 21-2
		SDS disease index 21-3
		SDS disease index 21-4
		cqSDS-001

GWAS QTL
	SDS
		SDS 1
		SDS 2

GWAS QTL Related by Ontology
	SDS
		SDS 1
		SDS 2
	SDS Dry Matter Retention
		SDS dry matter retention 1
	SDS Root Retention
		SDS root retention 1

Uniform Trial Parentage Records
	AR03-163008
	AR03-263051
	AR10SDS
	AR11SDS

Papers
	Abdelmajid et al. 2012 "The 'PI 438489B' by 'Hamilton' SNP-based genetic linkage map of soybean [Glycine max (L.) Merr.] identified quantitative trait loci that underlie seedling SDS resistance"
	Abdelmajid et al. 2012 "The 'PI 438489B' by 'Hamilton' SNP-based Genetic Linkage Map of Soybean [Glycine max (L.) Merr.] Identified Quantitative Trait Loci that Underlie Seedling SDS Resistance"
	Anderson et al. 2015A "Quantitative trait loci underlying resistance to sudden death syndrome (SDS) in MD96-5722 by �Spencer� recombinant inbred line population of soybean"
	Bao et al. 2015a "Association mapping and genomic prediction for resistance to sudden death syndrome in early maturing soybean germplasm"
	Chang et al. 1996 "Two additional loci underlying durable field resistance to soybean sudden death syndrome (SDS)."
	Chang et al. 1997 "Association of loci underlying field-resistance to soybean sudden-death syndrome (SDS) and cyst-nematode (SCN) RACE-3"
	Fribourg and Perez 1994 "Bean pod mottle virus (BPMV) affecting Glycine max (L.) Merr. in the Peruvian jungle"
	Gray and Achenbach 1996 "Severity of foliar symptoms and root and crown rot of soybean inoculated with various isolates and inoculum rates of Fusarium solani."
	Hartman et al. 1995 "Occurrence of soybean death syndrome in east-central Illinois and associated yield losses"
	Hartman et al. 1997 "Germplasm evaluation of Glycine max for resistance to Fusarium solani, the causal organism of sudden death syndrome."
	Hartman et al. 2000 "Evaluation of perennial Glycine species for resistance to soybean fungal pathogens that cause Sclerotinia stem rot and sudden death syndrome."
	Hnetkovsky et al. 1996 "Genetic mapping of loci underlying field resistance to soybean sudden death syndrome (SDS)."
	Iqbal et al. 2001 "Microsatellite markers identify three additional quantitative trait loci for resistance to soybean sudden-death syndrome (SDS) in Essex x Forrest RILs"
	Iqbal et al. 2002 "A pyramid of loci for partial resistance to Fusarium solani f. sp glycines maintains Myo-inositol-1-phosphate synthase expression in soybean roots"
	Iqbal et al. 2002 "Resistance locus pyramids alter transcript abundance in soybean roots inoculated with Fusarium solani f.sp. glycines"
	Islam et al. 2019 "Genomic changes and biochemical alterations of seed protein and oil content in a subset of fast neutron induced soybean mutants."
	Kazi et al. 2008 "Separate loci underlie resistance to root infection and leaf scorch during soybean sudden death syndrome"
	Kazi et al. 2010 "Iso-lines and inbred-lines confirmed loci that underlie resistance from cultivar 'Hartwig' to three soybean cyst nematode populations"
	Kim and Krishnam 2010A "The Lack of Beta-amylase Activity in Soybean Cultivar Altona sp is Associated with a 1.2 kb Deletion in the 5' Region of Beta-amylase I Gene"
	Koiwa et al. 2000 "A plant defensive cystatin (soyacystatin) targets cathepsin L-like digestive cysteine proteinases (DvCALs) in the larval midgut of western corn rootworm (Diabrotica virgifera virgifera)"
	Li et al. 1999 "Viability staining of soybean suspension-cultured cells and a seedling stem cutting assay to evaluate phytotoxicity of Fusarium solani f. sp. glycines culture filtrates."
	Lima and Purcifull 1980 "Immunochemical and microscopical techniques for detecting blackeye cowpea mosaic and soybean mosaic viruses in hypocotyls of germinated seeds."
	Lima et al. 1979 "Purification, partial characterization, and serology of blackeye cowpea mosaic virus"
	Luckew et al. 2017a "MN1606SP by Spencer filial soybean population reveals novel quantitative trait loci and interactions among loci conditioning SDS resistance"
	Luo et al. 1999 "Root colonization of soybean cultivars in the field by Fusarium solani f. sp. glycines"
	McDanial et al. 1995 "Partial characterization of a soybean strain of tobacco mosaic virus."
	Meksem et al. 1999 "Clustering among loci underlying soybean resistance to Fusarium solani, SDS and SCN in near-isogeniclines"
	Neto et al. 2007 "Mapping and confirmation of a new sudden death syndrome resistance QTL on linkage group D2 from the soybean genotypes PI 567374 and Ripley"
	Njiti and Lightfoot. 2006 "Genetic analysis infers Dt loci resistance to Fusarium solani f. sp. Glycines in indeterminate soybeans"
	Njiti et al. 1996 "Soybean response to sudden death syndrome: Inheritance influenced by cyst nematode resistance in Pyramid X Douglas progenies."
	Njiti et al. 1997 "Rate-reducing resistance to Fusarium solani f. sp. phaseoli underlies field resistance to soybean sudden death syndrome."
	Njiti et al. 1998 "Resistance to soybean sudden death syndrome and root colonization by Fusarium solani f. sp. glycine in near-isogenic lines."
	Njiti et al. 1998 "Relationship between soybean sudden death syndrome disease measures and yield components in F6-derived lines."
	Njiti et al. 2001 "Inoculum Rate Influences Selection for Field Resistance to Soybean Sudden Death Syndrome in the Greenhouse"
	Njiti et al. 2002 "Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas"
	Prabhu et al. 1999 "Selecting soybean cultivars for dual resistance to soybean cyst nematode and sudden death syndrome using two DNA markers."
	Roy et al. 1997 "Sudden death syndrome of soybean"
	Rupe 1989 "Frequency and pathogenicity of Fusarium solani recovered from soybeans with sudden death syndrome."
	Rupe et al. 1991 "Cultivar responses to sudden death syndrome of soybean."
	Rupe et al. 2000 "Effect of chloride and soybean cultivar on yield and the development of sudden death syndrome, soybean cyst nematode, and southern blight"
	Schmidt et al. 1999 "Registration of LS-G96 soybean germplasm resistant to soybean sudden death syndrome and soybean cyst nematode race 3"
	Stephens et al. 1993 "Relationship between field and greenhouse reactions of soybean to Fusarium solani."
	Swaminathan et al. 2016A "Quantitative trait loci underlying host responses of soybean to�Fusarium virguliforme�toxins that cause foliar sudden death syndrome"
	Swaminathan et al. 2018b "Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations"
	Tan et al. 2018A "QTL mapping and epistatic interaction analysis of field resistance to sudden death syndrome (Fusarium virguliforme) in soybean"
	Zhao et al. 2017a "Loci and candidate genes conferring resistance to soybean cyst nematode HG type 2.5.7"
	Wrather et al. 1995 "Effects of tillage, cultivar, and planting date on percentage of soybean leaves with symptoms of sudden death syndrome"
	Yang and Lundeen 1997 "Occurrence and distribution of soybean sudden-death syndrome in Iowa"

Help With Searching

Results of a search at SoyBase are presented in two complementary ways.

Text match
- The user-submitted search term is used to find exact lexical matches to the name or description of data objects in SoyBase (QTL, genes, etc.). If an exact match is not found, and when the search term was two or more words, then a further search is done using the individual words. These text-based matches are reported in the Text column of the results table.
Ontology match
- The goal of the ontology search is to identify data objects in SoyBase that are related to the search term but which might not have the exact search word(s) in their name or description. Data in SoyBase are tagged using a soybean-specific ontology termed a SOYnumber (SOY#). The user-submitted search term is used to search this SoyBase ontology for an exact match. If an exact match is not found, and when the search term was two or more words, the individual words are used in an additional search. Once a match is found its SOY# is used to traverse the ontology tree to identify related terms. These terms are then used to find SoyBase objects that are related to those directly identified by the search term. These ontology-based matches are reported in the Ontology column of the results table.
  
  Occasionally unrelated SoyBase data objects will be reported in the Ontology-based results along with the correctly identified ones. This is an unavoidable consequence of the the way we have structured the underlying trait, structure and development ontologies at SoyBase. For example a search for 'protein' also returns 'oil'-related objects since both are seed components.

Data Category	Search Was Performed Against
Genetic Marker	Genetic Markers (SNPs, SSRs, etc.).
Gene	Gene records (ex. Glyma.15g026400, Fad2-1).
QTL	Bi-Parental QTL and GWAS QTL collections.
Germplasm Collections	The Induced Mutant and Uniform Field Trial records.
Publications	Paper records and abstracts held within the Soybase data set.
Sitemap, News & Tutorials	SoyBase Sitemap, News archive, Upcoming meetings and Tutorials.

As an example of how these two searching capabilities can be helpful, a search for 'oil' will return those QTL that contain the word 'oil' in their name ('Seed oil', 'Seed oil to protein ratio', etc.) in the QTL line of the Text column. The Ontology column will contain these QTL along with the related QTL 'Seed palmitate', 'Seed oleic', etc.

Note: Because of the idiosyncratic ways that authors name phenotypic and developmental traits it is always advisable to look through the Ontology-based results, even when the submitted search term seems unambiguous. This can reveal additional SoyBase objects that might have been missed using exact text matching.

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Help With Searching

Text match

Ontology match