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GWAS Report for Shoot Zn 1

Experimental Details

Number of germplasm analyzed	104
Number of loci tested	31,748
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Identification of Novel Genomic Loci Associated with Soybean Shoot Tissue Macro- and Micronutrient Concentrations
(Dhanapal et al. 2018a)

Plant Genome. 2018, 11(2)
10.3835/plantgenome2017.07.0066

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002274

Other traits reported in this paper

• Shoot Ca 1
• Shoot Mg 1
• Shoot K 1
• Shoot P 1
• Shoot S 1
• Shoot B 1
• Shoot Cu 1
• Shoot Fe 1
• Shoot Mn 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Chromosome	Linkage Group
Shoot Zn 1-g1	Shoot Zinc Content	ss715580413	0.12	Gm01	D1a
Shoot Zn 1-g2.1	Shoot Zinc Content	ss715584971	0.11	Gm03	N
Shoot Zn 1-g2.2	Shoot Zinc Content	ss715584973	0.12	Gm03	N
Shoot Zn 1-g3	Shoot Zinc Content	ss715585611	0.14	Gm03	N
Shoot Zn 1-g4	Shoot Zinc Content	ss715586810	0.12	Gm03	N
Shoot Zn 1-g5	Shoot Zinc Content	ss715586848	0.14	Gm03	N
Shoot Zn 1-g6	Shoot Zinc Content	ss715587241	0.11	Gm04	C1
Shoot Zn 1-g7.1	Shoot Zinc Content	ss715587257	0.12	Gm04	C1
Shoot Zn 1-g7.2	Shoot Zinc Content	ss715587261	0.17	Gm04	C1
Shoot Zn 1-g8	Shoot Zinc Content	ss715589793	0.12	Gm05	A1
Shoot Zn 1-g9	Shoot Zinc Content	ss715591409	0.16	Gm05	A1
Shoot Zn 1-g10.1	Shoot Zinc Content	ss715591411	0.12	Gm05	A1
Shoot Zn 1-g10.2	Shoot Zinc Content	ss715591412	0.15	Gm05	A1
Shoot Zn 1-g11	Shoot Zinc Content	ss715591419	0.14	Gm05	A1
Shoot Zn 1-g12.1	Shoot Zinc Content	ss715596871	0.12	Gm07	M
Shoot Zn 1-g12.2	Shoot Zinc Content	ss715596872	0.12	Gm07	M
Shoot Zn 1-g13	Shoot Zinc Content	ss715596877	0.12	Gm07	M
Shoot Zn 1-g14.1	Shoot Zinc Content	ss715596896	0.13	Gm07	M
Shoot Zn 1-g14.2	Shoot Zinc Content	ss715596897	0.13	Gm07	M
Shoot Zn 1-g15	Shoot Zinc Content	ss715598480	0.12	Gm07	M
Shoot Zn 1-g16	Shoot Zinc Content	ss715598544	0.11	Gm07	M
Shoot Zn 1-g17	Shoot Zinc Content	ss715600434	0.12	Gm08	A2
Shoot Zn 1-g18	Shoot Zinc Content	ss715604421	0.12	Gm09	K
Shoot Zn 1-g19	Shoot Zinc Content	ss715604574	0.14	Gm09	K
Shoot Zn 1-g20	Shoot Zinc Content	ss715604600	0.12	Gm09	K
Shoot Zn 1-g21	Shoot Zinc Content	ss715612166	0.12	Gm12	H
Shoot Zn 1-g22.1	Shoot Zinc Content	ss715612168	0.12	Gm12	H
Shoot Zn 1-g22.2	Shoot Zinc Content	ss715612169	0.13	Gm12	H
Shoot Zn 1-g23	Shoot Zinc Content	ss715623110	0.15	Gm15	E
Shoot Zn 1-g24	Shoot Zinc Content	ss715623122	0.13	Gm15	E
Shoot Zn 1-g25	Shoot Zinc Content	ss715623134	0.12	Gm15	E
Shoot Zn 1-g26	Shoot Zinc Content	ss715623142	0.12	Gm15	E
Shoot Zn 1-g27	Shoot Zinc Content	ss715623149	0.12	Gm15	E
Shoot Zn 1-g28.1	Shoot Zinc Content	ss715635116	0.13	Gm19	L
Shoot Zn 1-g28.2	Shoot Zinc Content	ss715635117	0.12	Gm19	L
Shoot Zn 1-g29.1	Shoot Zinc Content	ss715635119	0.13	Gm19	L
Shoot Zn 1-g29.2	Shoot Zinc Content	ss715635120	0.12	Gm19	L
Shoot Zn 1-g29.3	Shoot Zinc Content	ss715635123	0.12	Gm19	L

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