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GWAS Report for Shoot Cu 1

Experimental Details

Number of germplasm analyzed	104
Number of loci tested	31,748
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Identification of Novel Genomic Loci Associated with Soybean Shoot Tissue Macro- and Micronutrient Concentrations
(Dhanapal et al. 2018a)

Plant Genome. 2018, 11(2)
10.3835/plantgenome2017.07.0066

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002268

Other traits reported in this paper

• Shoot Ca 1
• Shoot Mg 1
• Shoot K 1
• Shoot P 1
• Shoot S 1
• Shoot B 1
• Shoot Fe 1
• Shoot Mn 1
• Shoot Zn 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Chromosome	Linkage Group
Shoot Cu 1-g1	Shoot Copper Content	ss715580217	0.10	Gm01	D1a
Shoot Cu 1-g2.1	Shoot Copper Content	ss715583130	0.13	Gm02	D1b
Shoot Cu 1-g2.2	Shoot Copper Content	ss715583131	0.17	Gm02	D1b
Shoot Cu 1-g3	Shoot Copper Content	ss715587241	0.11	Gm04	C1
Shoot Cu 1-g4.1	Shoot Copper Content	ss715587257	0.12	Gm04	C1
Shoot Cu 1-g4.2	Shoot Copper Content	ss715587261	0.12	Gm04	C1
Shoot Cu 1-g5	Shoot Copper Content	ss715588403	0.12	Gm04	C1
Shoot Cu 1-g6	Shoot Copper Content	ss715591438	0.10	Gm05	A1
Shoot Cu 1-g7	Shoot Copper Content	ss715604600	0.10	Gm09	K
Shoot Cu 1-g8	Shoot Copper Content	ss715605639	0.10	Gm10	O
Shoot Cu 1-g9	Shoot Copper Content	ss715612166	0.12	Gm12	H
Shoot Cu 1-g10	Shoot Copper Content	ss715612168	0.12	Gm12	H
Shoot Cu 1-g11	Shoot Copper Content	ss715614831	0.09	Gm13	F
Shoot Cu 1-g12	Shoot Copper Content	ss715617719	0.10	Gm14	B2
Shoot Cu 1-g13.1	Shoot Copper Content	ss715618596	0.10	Gm14	B2
Shoot Cu 1-g13.2	Shoot Copper Content	ss715618601	0.10	Gm14	B2
Shoot Cu 1-g13.3	Shoot Copper Content	ss715618608	0.10	Gm14	B2
Shoot Cu 1-g13.4	Shoot Copper Content	ss715618612	0.10	Gm14	B2
Shoot Cu 1-g13.5	Shoot Copper Content	ss715618620	0.10	Gm14	B2
Shoot Cu 1-g14.1	Shoot Copper Content	ss715622632	0.10	Gm15	E
Shoot Cu 1-g14.2	Shoot Copper Content	ss715622633	0.10	Gm15	E
Shoot Cu 1-g15	Shoot Copper Content	ss715624945	0.11	Gm16	J
Shoot Cu 1-g16	Shoot Copper Content	ss715625324	0.11	Gm16	J
Shoot Cu 1-g17	Shoot Copper Content	ss715625328	0.11	Gm16	J

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Click Here to View Full List of GWAS QTL