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GWAS Report for Shoot Fe 1

Experimental Details

Number of germplasm analyzed	104
Number of loci tested	31,748
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Identification of Novel Genomic Loci Associated with Soybean Shoot Tissue Macro- and Micronutrient Concentrations
(Dhanapal et al. 2018a)

Plant Genome. 2018, 11(2)
10.3835/plantgenome2017.07.0066

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002270

Other traits reported in this paper

• Shoot Ca 1
• Shoot Mg 1
• Shoot K 1
• Shoot P 1
• Shoot S 1
• Shoot B 1
• Shoot Cu 1
• Shoot Mn 1
• Shoot Zn 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Chromosome	Linkage Group
Shoot Fe 1-g1	Shoot Iron Content	ss715579327	0.12	Gm01	D1a
Shoot Fe 1-g2.1	Shoot Iron Content	ss715581093	0.12	Gm02	D1b
Shoot Fe 1-g2.2	Shoot Iron Content	ss715581094	0.12	Gm02	D1b
Shoot Fe 1-g3.1	Shoot Iron Content	ss715581096	0.12	Gm02	D1b
Shoot Fe 1-g3.2	Shoot Iron Content	ss715581097	0.12	Gm02	D1b
Shoot Fe 1-g4	Shoot Iron Content	ss715581523	0.12	Gm02	D1b
Shoot Fe 1-g5	Shoot Iron Content	ss715590845	0.12	Gm05	A1
Shoot Fe 1-g6	Shoot Iron Content	ss715597822	0.12	Gm07	M
Shoot Fe 1-g7.1	Shoot Iron Content	ss715603713	0.12	Gm09	K
Shoot Fe 1-g7.2	Shoot Iron Content	ss715603714	0.12	Gm09	K
Shoot Fe 1-g8.1	Shoot Iron Content	ss715603939	0.15	Gm09	K
Shoot Fe 1-g8.2	Shoot Iron Content	ss715603940	0.20	Gm09	K
Shoot Fe 1-g8.3	Shoot Iron Content	ss715603941	0.15	Gm09	K
Shoot Fe 1-g9	Shoot Iron Content	ss715603946	0.15	Gm09	K
Shoot Fe 1-g10	Shoot Iron Content	ss715603949	0.14	Gm09	K
Shoot Fe 1-g11	Shoot Iron Content	ss715603953	0.15	Gm09	K
Shoot Fe 1-g12.1	Shoot Iron Content	ss715604767	0.12	Gm09	K
Shoot Fe 1-g12.2	Shoot Iron Content	ss715604768	0.14	Gm09	K
Shoot Fe 1-g13.1	Shoot Iron Content	ss715604773	0.14	Gm09	K
Shoot Fe 1-g13.2	Shoot Iron Content	ss715604774	0.14	Gm09	K
Shoot Fe 1-g14	Shoot Iron Content	ss715604775	0.16	Gm09	K
Shoot Fe 1-g15	Shoot Iron Content	ss715604779	0.12	Gm09	K
Shoot Fe 1-g16	Shoot Iron Content	ss715604853	0.13	Gm09	K
Shoot Fe 1-g17.1	Shoot Iron Content	ss715606682	0.12	Gm10	O
Shoot Fe 1-g17.2	Shoot Iron Content	ss715606683	0.13	Gm10	O
Shoot Fe 1-g18	Shoot Iron Content	ss715611801	0.14	Gm12	H
Shoot Fe 1-g19.1	Shoot Iron Content	ss715612489	0.12	Gm12	H
Shoot Fe 1-g19.2	Shoot Iron Content	ss715612490	0.12	Gm12	H
Shoot Fe 1-g20	Shoot Iron Content	ss715612979	0.12	Gm12	H
Shoot Fe 1-g21	Shoot Iron Content	ss715613122	0.12	Gm12	H
Shoot Fe 1-g22	Shoot Iron Content	ss715614291	0.17	Gm11	B1
Shoot Fe 1-g23	Shoot Iron Content	ss715614293	0.17	Gm11	B1
Shoot Fe 1-g24	Shoot Iron Content	ss715614298	0.12	Gm11	B1
Shoot Fe 1-g25	Shoot Iron Content	ss715614300	0.16	Gm11	B1
Shoot Fe 1-g26	Shoot Iron Content	ss715614306	0.15	Gm11	B1
Shoot Fe 1-g27.1	Shoot Iron Content	ss715614311	0.14	Gm11	B1
Shoot Fe 1-g27.2	Shoot Iron Content	ss715614312	0.12	Gm11	B1
Shoot Fe 1-g28.1	Shoot Iron Content	ss715614315	0.15	Gm11	B1
Shoot Fe 1-g28.2	Shoot Iron Content	ss715614316	0.15	Gm11	B1
Shoot Fe 1-g28.3	Shoot Iron Content	ss715614317	0.12	Gm11	B1
Shoot Fe 1-g29	Shoot Iron Content	ss715614320	0.16	Gm11	B1
Shoot Fe 1-g30.1	Shoot Iron Content	ss715614322	0.15	Gm11	B1
Shoot Fe 1-g30.2	Shoot Iron Content	ss715614323	0.16	Gm11	B1
Shoot Fe 1-g31.1	Shoot Iron Content	ss715614325	0.12	Gm11	B1
Shoot Fe 1-g31.2	Shoot Iron Content	ss715614327	0.15	Gm11	B1
Shoot Fe 1-g32.1	Shoot Iron Content	ss715614329	0.16	Gm11	B1
Shoot Fe 1-g32.2	Shoot Iron Content	ss715614330	0.12	Gm11	B1
Shoot Fe 1-g32.3	Shoot Iron Content	ss715614331	0.16	Gm11	B1
Shoot Fe 1-g32.4	Shoot Iron Content	ss715614332	0.16	Gm11	B1
Shoot Fe 1-g32.5	Shoot Iron Content	ss715614333	0.12	Gm11	B1
Shoot Fe 1-g32.6	Shoot Iron Content	ss715614334	0.16	Gm11	B1
Shoot Fe 1-g33	Shoot Iron Content	ss715614441	0.15	Gm13	F
Shoot Fe 1-g34	Shoot Iron Content	ss715614444	0.16	Gm13	F
Shoot Fe 1-g35	Shoot Iron Content	ss715614495	0.12	Gm13	F
Shoot Fe 1-g36	Shoot Iron Content	ss715614506	0.12	Gm13	F
Shoot Fe 1-g37	Shoot Iron Content	ss715615493	0.12	Gm13	F
Shoot Fe 1-g38	Shoot Iron Content	ss715617055	0.13	Gm13	F
Shoot Fe 1-g39	Shoot Iron Content	ss715617366	0.11	Gm14	B2
Shoot Fe 1-g40	Shoot Iron Content	ss715619587	0.13	Gm14	B2
Shoot Fe 1-g41.1	Shoot Iron Content	ss715620329	0.12	Gm15	E
Shoot Fe 1-g41.2	Shoot Iron Content	ss715620330	0.13	Gm15	E
Shoot Fe 1-g41.3	Shoot Iron Content	ss715620331	0.13	Gm15	E
Shoot Fe 1-g42	Shoot Iron Content	ss715622954	0.15	Gm15	E
Shoot Fe 1-g43	Shoot Iron Content	ss715622982	0.12	Gm15	E
Shoot Fe 1-g44.1	Shoot Iron Content	ss715623847	0.12	Gm16	J
Shoot Fe 1-g44.2	Shoot Iron Content	ss715623848	0.12	Gm16	J
Shoot Fe 1-g45.1	Shoot Iron Content	ss715623856	0.15	Gm16	J
Shoot Fe 1-g45.2	Shoot Iron Content	ss715623859	0.15	Gm16	J
Shoot Fe 1-g46	Shoot Iron Content	ss715623861	0.16	Gm16	J
Shoot Fe 1-g47	Shoot Iron Content	ss715629958	0.13	Gm18	G
Shoot Fe 1-g48	Shoot Iron Content	ss715632057	0.13	Gm18	G
Shoot Fe 1-g49	Shoot Iron Content	ss715635930	0.16	Gm19	L
Shoot Fe 1-g50	Shoot Iron Content	ss715635934	0.17	Gm19	L
Shoot Fe 1-g51	Shoot Iron Content	ss715635948	0.14	Gm19	L
Shoot Fe 1-g52.1	Shoot Iron Content	ss715635950	0.17	Gm19	L
Shoot Fe 1-g52.2	Shoot Iron Content	ss715635951	0.17	Gm19	L

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