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GWAS Report for Shoot K 1

Experimental Details

Number of germplasm analyzed	104
Number of loci tested	31,748
Platform name	SoySNP50K
Platform details	SoySNP50K iSelect SNP Beadchip

Publication for This Experiment

Identification of Novel Genomic Loci Associated with Soybean Shoot Tissue Macro- and Micronutrient Concentrations
(Dhanapal et al. 2018a)

Plant Genome. 2018, 11(2)
10.3835/plantgenome2017.07.0066

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002262

Other traits reported in this paper

• Shoot Ca 1
• Shoot Mg 1
• Shoot P 1
• Shoot S 1
• Shoot B 1
• Shoot Cu 1
• Shoot Fe 1
• Shoot Mn 1
• Shoot Zn 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Chromosome	Linkage Group
Shoot K 1-g1	Shoot Potassium Content	ss715579931	0.12	Gm01	D1a
Shoot K 1-g2	Shoot Potassium Content	ss715581242	0.12	Gm02	D1b
Shoot K 1-g3	Shoot Potassium Content	ss715581244	0.17	Gm02	D1b
Shoot K 1-g4	Shoot Potassium Content	ss715581329	0.08	Gm02	D1b
Shoot K 1-g5	Shoot Potassium Content	ss715582594	0.11	Gm02	D1b
Shoot K 1-g6	Shoot Potassium Content	ss715583151	0.11	Gm02	D1b
Shoot K 1-g7	Shoot Potassium Content	ss715593829	0.10	Gm06	C2
Shoot K 1-g8	Shoot Potassium Content	ss715593841	0.09	Gm06	C2
Shoot K 1-g9	Shoot Potassium Content	ss715593852	0.08	Gm06	C2
Shoot K 1-g10	Shoot Potassium Content	ss715593868	0.09	Gm06	C2
Shoot K 1-g11	Shoot Potassium Content	ss715597932	0.08	Gm07	M
Shoot K 1-g12.1	Shoot Potassium Content	ss715598065	0.12	Gm07	M
Shoot K 1-g12.2	Shoot Potassium Content	ss715598067	0.09	Gm07	M
Shoot K 1-g12.3	Shoot Potassium Content	ss715598070	0.13	Gm07	M
Shoot K 1-g12.4	Shoot Potassium Content	ss715598081	0.08	Gm07	M
Shoot K 1-g13	Shoot Potassium Content	ss715598093	0.13	Gm07	M
Shoot K 1-g14	Shoot Potassium Content	ss715598106	0.08	Gm07	M
Shoot K 1-g15	Shoot Potassium Content	ss715598117	0.11	Gm07	M
Shoot K 1-g16	Shoot Potassium Content	ss715600019	0.09	Gm08	A2
Shoot K 1-g17	Shoot Potassium Content	ss715600022	0.14	Gm08	A2
Shoot K 1-g18	Shoot Potassium Content	ss715603535	0.08	Gm09	K
Shoot K 1-g19	Shoot Potassium Content	ss715604244	0.08	Gm09	K
Shoot K 1-g20	Shoot Potassium Content	ss715604256	0.08	Gm09	K
Shoot K 1-g21	Shoot Potassium Content	ss715604274	0.08	Gm09	K
Shoot K 1-g22	Shoot Potassium Content	ss715607037	0.09	Gm10	O
Shoot K 1-g23.1	Shoot Potassium Content	ss715607053	0.09	Gm10	O
Shoot K 1-g23.2	Shoot Potassium Content	ss715607054	0.09	Gm10	O
Shoot K 1-g23.3	Shoot Potassium Content	ss715607056	0.09	Gm10	O
Shoot K 1-g24	Shoot Potassium Content	ss715607072	0.07	Gm10	O
Shoot K 1-g25	Shoot Potassium Content	ss715608927	0.09	scaffold_21	O
Shoot K 1-g26.1	Shoot Potassium Content	ss715608951	0.10	scaffold_21	O
Shoot K 1-g26.2	Shoot Potassium Content	ss715608952	0.11	scaffold_21	O
Shoot K 1-g27	Shoot Potassium Content	ss715609030	0.07	scaffold_21	O
Shoot K 1-g28	Shoot Potassium Content	ss715609051	0.12	scaffold_21	O
Shoot K 1-g29	Shoot Potassium Content	ss715609059	0.07	scaffold_21	O
Shoot K 1-g30	Shoot Potassium Content	ss715615849	0.07	Gm13	F
Shoot K 1-g31	Shoot Potassium Content	ss715618815	0.08	Gm14	B2
Shoot K 1-g32	Shoot Potassium Content	ss715619792	0.11	Gm14	B2
Shoot K 1-g33	Shoot Potassium Content	ss715624781	0.12	Gm16	J
Shoot K 1-g34	Shoot Potassium Content	ss715629801	0.14	Gm18	G
Shoot K 1-g35	Shoot Potassium Content	ss715629913	0.12	Gm18	G
Shoot K 1-g36	Shoot Potassium Content	ss715629921	0.12	Gm18	G
Shoot K 1-g37	Shoot Potassium Content	ss715630092	0.08	Gm18	G
Shoot K 1-g38.1	Shoot Potassium Content	ss715630099	0.10	Gm18	G
Shoot K 1-g38.2	Shoot Potassium Content	ss715630101	0.08	Gm18	G
Shoot K 1-g39	Shoot Potassium Content	ss715632404	0.12	Gm18	G
Shoot K 1-g40	Shoot Potassium Content	ss715632710	0.10	Gm18	G
Shoot K 1-g41	Shoot Potassium Content	ss715632713	0.10	Gm18	G

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