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GWAS Report for Plant height 5

Experimental Details

Number of germplasm analyzed	809
Number of loci tested	4M

Publication for This Experiment

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean
(Fang et al. 2017)

Genome Biology 2017, 18(161)
10.1186/s13059-017-1289-9

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001365
PO	PO:0006341
TO	TO:0000207

Other traits reported in this paper

• First flower 5
• Interbranch length 1
• Branching 1
• Canopy width 1
• Leaflet chlorophyll 2
• Seed palmitic 2
• Seed long-chain fatty acid 1
• Seed stearic 1
• Seed alpha-linolenic acid 1
• Flower color 2
• Hilum color 2
• Seed amino acids 1
• Leaflet area 1
• Leaflet length 1
• Leaflet shape 1
• Leaflet width 1
• Lodging 1
• Seed set 1
• R8 full maturity 5
• Pod shattering 1
• Pubescence color 2
• Reproductive stage length 1
• Seed coat luster 1
• Seed coat color 1
• Seed height 1
• Seed width to height ratio 1
• Seed length to thickness ratio 2
• Seed thickness 2
• Seed volume 1
• Stem termination type 1
• Internode length 1
• Node number 1
• Pod number 1
• Stem shape, main 1
• Seed oil to protein ratio 1
• Total seed number 3

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	p-value	Chromosome	Linkage Group
Plant height 5-g1.1	Plant height	Chr10_44961185	3.09E-10	Gm10	O
Plant height 5-g1.2	Plant height	Chr10_45310798	3.09E-10	Gm10	O
Plant height 5-g2	Plant height	Chr11_4980454	1.38E-07	Gm11	B1
Plant height 5-g3.1	Plant height	Chr19_44323024	1.48E-27	Gm19	L
Plant height 5-g3.2	Plant height	Chr19_45205190	1.48E-27	Gm19	L
Plant height 5-g3.3	Plant height	Chr19_46340503	1.48E-27	Gm19	L
Plant height 5-g4.1	Plant height	Chr18_55048864	1.70E-11	Gm18	G
Plant height 5-g4.2	Plant height	Chr18_55628880	1.70E-11	Gm18	G
Plant height 5-g4.3	Plant height	Chr18_55784929	1.70E-11	Gm18	G

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Click Here to View Full List of GWAS QTL