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GWAS Report for Leaflet length 1

Experimental Details

Number of germplasm analyzed	809
Number of loci tested	4M

Publication for This Experiment

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean
(Fang et al. 2017)

Genome Biology 2017, 18(161)
10.1186/s13059-017-1289-9

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001379
PO	PO:0020049
TO	TO:0002690

Other traits reported in this paper

• First flower 5
• Interbranch length 1
• Branching 1
• Canopy width 1
• Leaflet chlorophyll 2
• Seed palmitic 2
• Seed long-chain fatty acid 1
• Seed stearic 1
• Seed alpha-linolenic acid 1
• Flower color 2
• Hilum color 2
• Seed amino acids 1
• Leaflet area 1
• Leaflet shape 1
• Leaflet width 1
• Lodging 1
• Seed set 1
• Plant height 5
• R8 full maturity 5
• Pod shattering 1
• Pubescence color 2
• Reproductive stage length 1
• Seed coat luster 1
• Seed coat color 1
• Seed height 1
• Seed width to height ratio 1
• Seed length to thickness ratio 2
• Seed thickness 2
• Seed volume 1
• Stem termination type 1
• Internode length 1
• Node number 1
• Pod number 1
• Stem shape, main 1
• Seed oil to protein ratio 1
• Total seed number 3

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	p-value	Chromosome	Linkage Group
Leaflet length 1-g1.1	Leaf length	Chr20_35819212	1.70E-10	Gm20	I
Leaflet length 1-g1.2	Leaf length	Chr20_35828042	1.70E-10	Gm20	I
Leaflet length 1-g1.3	Leaf length	Chr20_36429226	1.70E-10	Gm20	I

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Click Here to View Full List of GWAS QTL