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SCN 49-1
Parent 1:A95-684043
Parent 2:LS98-0582
Intervals associated:ss107919849Đss107913087
Interval length:0.3
Interval LOD score:4.2
Trait name:Reaction to Heterodera glycines

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000384
Gene OntologyGO:0009624

     
Other related QTL's
SDS

Other names for the QTL
SCN-5

References for the QTL
Swaminathan et al. 2018bMapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations 
Theor Appl Genet 2018, 131:1047-1062

     
Maps containing SCN 49-1
MapLGStartEnd
GmComposite2003_B1 B143.0043.30See this QTL region in Sequence Browser

Loci positively associated with the QTL
ss107919849Parent_1SCN Resistance
ss107919849Parent_2SCN and SDS Resistance
ss107919849Phenotypic_R212
ss107919849Additive_effect-16

Population types used in identification of the QTL
F7 RIL

Parent trait values associated with the QTL
ParentTrait
A95-684043SCN Resistance
LS98-0582SCN and SDS Resistance

Other QTLs studied

Loci associated with the QTL
ss107919849
ss107913087

Methods used to identify the QTL
Kosambi
MAPMAKER 2.0
Qgene

Comments about the QTL
The data comes from the parental line AX19287 in relation to soybean cyst nematode. QTL associated markers were approximately placed on the SoyBase Composite2003 genetic map by BLASTing the markerŐs sequence against the Wm82.a2 genome, identifying the nearest genetically mapped markers on each side of the BLAST hit, and interpolating the markerŐs position on the genetic map to a similar relative position. SCN is caused by the nematode Heterodera glycines.






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