Pod number 12-1 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Pod number 12-1

Parent 1:	W05
Parent 2:	C08
Interval length:	2
Percent Variation Explained:	15.58
Trait name:	Pods per plant

Controlled vocabulary terms associated with the QTL

Source	Accession Number
Plant Trait Ontology	TO:0000894
Plant Ontology	PO:0009001

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Other related QTL's

Total growth duration

Seed coat color

Seed anthocyanin content

Trailing growth

Seeds per plant

Seed antioxidant content

Seed length to width ratio

References for the QTL

Qi et al. 2014b

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing
Nature Communications (2014) 5:4340

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Maps containing Pod number 12-1

Map	LG	Start	End
GmComposite2003_F	F	109.50	111.50	See this QTL region in Sequence Browser

Loci positively associated with the QTL

Gm13:38761376

Parent_1

Salt tolerant

Gm13:38761376

Parent_2

Salt intolerant

Population types used in identification of the QTL

RIL

Parent trait values associated with the QTL

Parent	Trait
W05	Salt tolerant
C08	Salt intolerant

Loci associated with the QTL

Methods used to identify the QTL

Kosambi

QTLCartographer

Comments about the QTL

Locus was approximately placed on the SoyBase Composite2003 genetic map by comparing the given base pair range in the Wm82.a2 genome, identifying the nearest genetically mapped markers on each side of the given range, and interpolating the markerÕs position on the genetic map to a similar relative position.

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