Glyma15g42630 - SoyBase

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Report for Sequence Feature Glyma15g42630

Feature Type:	gene_model
Chromosome:	Gm15
Start:	50062942
stop:	50066655
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06850	AT	Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr5:2127200-2129584 REVERSE LENGTH=794	SoyBase	E_val: 0	ISS
GO:0034613	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein localization	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10024	Panther	SYNAPTOTAGMIN	JGI		ISS
PTHR10024:SF97	Panther	C2 DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF08372	PFAM	Plant phosphoribosyltransferase C-terminal	JGI		ISS
UniRef100_G7J1T2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Medicago truncatula RepID=G7J1T2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MJL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MJL7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g42630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42630

Paralog	Evidence	Comments
Glyma08g16140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g271400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g42630

Limit To All Plant Sequences

>Glyma15g42630.2   sequence type=CDS   gene model=Glyma15g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCAATAAAGAGAAGACAAAGAGGTGCTCCAGTCACAATGCACTCAGTTGGCCCTCAAGTCCATCCTAGTAGCCAAGATGAAGACTACAATCTGAGGGAGACTGATCCACAACTCGGTGGTGACCGGTGGCCTAATGCCAGAAGAGGGTGGATCGGTGGTGAAAGATTCTCAAGCACATATGACCTTGTTGAGCAGATGTTCTATCTGTATGTTAGGGTGGTGAAAGCCAAAGATCTTTCCCCCAGCACTCTCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGAAGAACAAAGCACATAGAGAAGAAAACCAACCCAGAATGGAACCAAGTCTATGCTTTCTCCAAAGACAGAATTCAATCTTCTGTTCTGGAAGTCATTGTCAAAGACAAAGAAATGCTTGGAAGAGATGATTATATTGGAAGGGTGGCCTTTGATCTCAATGAGGTTCCAACCAGAGTTCCCCCAGACAGTCCATTGGCTCCTCAATGGTACAGGCTCGAGGACCGGCGAGGAGAAGGGAAGGTGAGGGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAAGCCTTCTCAGAGGCATGGCATTCTGATGCTGCCGCTGTGTCTGGAGAGGGTGTTTTCAATGTCAGATCAAAGGTTTATGTGTCACCAAAACTGTGGTATCTCAGGGTGAATGCCATTGAAGCACAAGATGTGATACCGAGTGACAGAAACCGGCTGCCAGAGGTTTTTGTCAAGGCTCAGATGGGGAGCCAAGTGTTGAGGACCAAGATATGTCCAACTAGGACAACCACACCACTTTGGAATGAAGATTTGGTATTTGTGGCAGCTGAACCATTTGAGGAGCAGTTGACAATCACTGTGGAGGATCGCGTGCACCCTTCAAGAGATGAAGTACTTGGGAAGATAATCTTGCCACTGACCCTCTTTGAGAAGCGGCTAGACCACAGGCCTGTTCATTCACGCTGGTTCAATCTTGAGAAGTTTGGTTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTTAAGTTTTCAAGCAGGATTCACCTAAGAATTTCCCTTGAAGGTGGATACCATGTCCTTGATGAGTCCACTTTGTACTCAAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCTATTGGGGTGCTTGAAGTAGGGATCTTAGGAGCACAAGGACTCCTCCCAATGAAGATGAGGGATGGCCGCGGCACCACGGATGCATATTGTGTTGCCAAGTATGGCCAAAAATGGGTCAGAACCAGAACAATTCTTGACAATTTTAGTCCAAAATGGAATGAGCAATACACATGGGAGATTTATGATCCTTGCACTGTAATAACACTTGGTGTTTTTGACAACTGCCATTTAGGAGGAGGGGAAAAAGCCACTGCTGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGAATTAGGCTCTCAACACTTGAAGCTCATAGGATATACACTCATAGCCATCCCCTTCTTGTTTTGCACCCACATGGTGTCAAGAAAATGGGTGAGCTTCAGCTAGCAGTGAGGTTCACTAGCCTCTCACTGGCTAACATGGTTTACATTTATGGCCAACCCTTGCTTCCAAAGCAGCATTACTTGCGCCCTTTCATCGTTAACCAAGTAGAGAATTTGAGGTACCAAGCCATGAGCATTGTGGCTGTGAGGCTTGGAAGAGCTGAACCTCCCCTCAGGAAGGAGGTAGTAGAGTACATGTTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGCATCATGTCACTTTTCTCTGGCATCATCACAATGGGGCAATGGTTTAGCCAAGTTTGCCATTGGAAGAACCCCATCACATCAATCCTAGTTCACATTCTCTTCCTCATACTCATTTGCTACCCTGAATTGATACTTCCAACCTTGTTCCTCTACATGTTCTTGATTGGCCTGTGGAACTATAGGTTTAGGCCTAGACACCCACCCCACATGGACACAAAACTCTCATGGGCAGAAGTGGTTCACCCCGATGAACTCGACGAAGAGTTCGACACATTCCCAACTTCTAGACCACATGATGTGGTGAAAATGAGGTATGACAGGCTTCGAAGTGTTGCGGGAAGGATTCAAACAGTTGTTGGGGACATAGCAACACAGGGAGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACCCCAGGGCAACCAGCTTCTTTGTAGTGTTCAGCCTTTGTTCTGCTGTGGTTCTCTATGCAACACCACCAAAAGTGGTGGCTATGGTAACAGGCTTGTACTATCTGCGGCATCCCAAGTTTCGTAGCAAGCTGCCTTCTGTGCCCAGCAACTTCTTCAAGAGGCTTCCAGCTAGAACAGATAGCATGTTGTGA

Predicted protein sequences of Glyma15g42630

Limit To All Plant Sequences

>Glyma15g42630.2   sequence type=predicted peptide   gene model=Glyma15g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISIKRRQRGAPVTMHSVGPQVHPSSQDEDYNLRETDPQLGGDRWPNARRGWIGGERFSSTYDLVEQMFYLYVRVVKAKDLSPSTLTSSCDPYVEVKLGNYKGRTKHIEKKTNPEWNQVYAFSKDRIQSSVLEVIVKDKEMLGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGDIMLAVWMGTQADEAFSEAWHSDAAAVSGEGVFNVRSKVYVSPKLWYLRVNAIEAQDVIPSDRNRLPEVFVKAQMGSQVLRTKICPTRTTTPLWNEDLVFVAAEPFEEQLTITVEDRVHPSRDEVLGKIILPLTLFEKRLDHRPVHSRWFNLEKFGFGMMEADRRNELKFSSRIHLRISLEGGYHVLDESTLYSSDQRPTARQLWKQPIGVLEVGILGAQGLLPMKMRDGRGTTDAYCVAKYGQKWVRTRTILDNFSPKWNEQYTWEIYDPCTVITLGVFDNCHLGGGEKATAGTAARDSRIGKVRIRLSTLEAHRIYTHSHPLLVLHPHGVKKMGELQLAVRFTSLSLANMVYIYGQPLLPKQHYLRPFIVNQVENLRYQAMSIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSILVHILFLILICYPELILPTLFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEVVHPDELDEEFDTFPTSRPHDVVKMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATSFFVVFSLCSAVVLYATPPKVVAMVTGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML*

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