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Tissue and developmental expression pattern of Glyma15g42630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Click picture to see a full size image

RNAseq tissue, developmental and treatment expression patterns of Glyma15g42630

All values in RPMK or FPMK

GSE117686

Williams 82 unifolate 0 hr 4 F cold stress	Williams 82 unifolate 1 hr 4 F cold stress	Williams 82 unifolate 24 hr 4 F cold stress
16, 9, 0	13, 3, 16	7, 7, 9

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GSE33155

Glaborus Clark shoot tip	Wild-type Clark shoot tip
0.18	0.21

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GSE42550

Williams cotyledon stage 1	Williams cotyledon stage 2	Williams cotyledon stage 3	Williams cotyledon stage 4	Williams cotyledon stage 5	Williams cotyledon stage 6	Williams cotyledon stage 7
0.22, 0.53	0.17, 0.25	0.12, 0.15	0.02, 0.02	0.02, 0.01	0.02, 0.02	0.01, 0.01

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GSE42871

Williams 43 100-200 mg seed cotyledon	Williams 43 400-500 mg seed cotyledon	Williams 43 5-6 mg seed cotyledon	Williams 43 5-6 mg seed seed coat	Williams 43 5-6 mg whole seed	Williams 43 dry seed	Williams 43 whole seed 12-14 DAF	Williams 43 whole seed 22-24 DAF	Williams 43 whole seed 4 DAF
0.02, 0.02	0.16, 0.1	0.04	0	0.15, 0.18	0.32, 0.17	0.09, 0.22	0.12, 0.1	0.03, 0.19

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GSE46096

Williams 82 Early Maturation Stage Axis Parenchyma	Williams 82 Early Maturation Stage Axis Vasculature	Williams 82 Early Maturation Stage Cotyledon Abaxial Epidermis	Williams 82 Early Maturation Stage Cotyledon Vasculature	Williams 82 Early Maturation Stage Endosperm	Williams 82 Early Maturation Stage Seed Coat Hilum	Williams 82 Early Maturation Stage Seed Coat Hourglass Cells	Williams 82 Early Maturation Stage Seed Coat Palisade	Williams 82 Early Maturation Stage Seed Coat Parenchyma	Williams 82 Early maturation stage embryonic axis SAM	Williams 82 Early maturation stage embryonic axis epidermis	Williams 82 Early maturation stage embryonic axis plumule	Williams 82 Early maturation stage embryonic axis root tip	Williams 82 Early maturation stage embryonic axis stele	Williams 82 Early maturation stage embryonic cotyledon abaxial parenchyma	Williams 82 Early maturation stage embryonic cotyledon adaxial epidermis	Williams 82 Early maturation stage embryonic cotyledon adaxial parenchyma
0, 0, 0	0, 0, 0	1, 0, 0	1, 0	0, 0, 0	0, 0, 0	0, 0, 0	0, 0, 0	5, 5, 3	0, 0, 0	0, 0, 1	0, 0, 0	0, 0, 0	0, 0, 0	0, 1, 0	0, 0, 0	0, 1, 0

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GSE49097

Hutchesen high vapor pressure deficit	Hutchesen low vapor pressure deficit	PI 416937 high vapor pressure deficit	PI 416937 low vapor pressure deficit	PI 471938 high vapor pressure deficit	PI 471938 low vapor pressure deficit
0.066	0.104	0, 0	0.426	0.027	0.022, 0.114

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GSE54903

Clark mutant seed coat	Clark wild type seed coat	Harsoy mutant seed coat	Harsoy wild type seed coat
0.53, 0.29, 0.52	0.32, 0.21, 0.45	1.03, 0.46	0.63, 0.54, 0.51

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GSE57252

Williams 82 Control	Williams 82 dehydration 12hr	Williams 82 dehydration 1hr	Williams 82 dehydration 6hr	Williams 82 saline 12hr	Williams 82 saline 1hr	Williams 82 saline 6hr
1.92, 3.95, 8.49	10.91, 10.79, 8.23	7.5, 10.54, 2.54	6.16, 4.98, 11.51	6.89, 4.62, 3.36	15.9, 8.9, 11.12	17.49, 5.29, 4.48

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GSE57349

Williams 82 Globular stage embryo	Williams 82 Globular stage endosperm	Williams 82 Globular stage seed coat endothelium	Williams 82 Globular stage seed coat epidermis	Williams 82 Globular stage seed coat hilum	Williams 82 Globular stage seed coat inner integument	Williams 82 Globular stage seed coat outer integument	Williams 82 Globular stage suspensor
0, 0.44138, 0	0, 0, 0	0.089747, 0.185554, 0	0, 0.354957, 0.6991	0.450543, 0.168363, 0.0769937	0, 0, 0, 0.0562142	0.815203, 0.422052, 0.524995	0, 0, 0

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GSE57350

Williams 82 Heart stage embryo	Williams 82 Heart stage endosperm	Williams 82 Heart stage seed coat endothelium	Williams 82 Heart stage seed coat epidermis	Williams 82 Heart stage seed coat hilum	Williams 82 Heart stage seed coat inner integument	Williams 82 Heart stage seed coat outer integument	Williams 82 Heart stage suspensor
0.356596, 0.21188, 0.637866	0.414369, 0.426284, 0.359549	0, 0.212755, 0.0852555	0.179623, 0.388085, 0.346321	0.366183, 0.372411, 0.078484	0, 0.233826, 0	0.318499, 0.0972654, 1.76693	0.275707, 0, 0.676906

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GSE57606

Williams 82 Cotyledon stage embryo	Williams 82 Cotyledon stage embryo axis	Williams 82 Cotyledon stage embryo cotyledon	Williams 82 Cotyledon stage endosperm	Williams 82 Cotyledon stage seed coat endothelium	Williams 82 Cotyledon stage seed coat epidermis	Williams 82 Cotyledon stage seed coat hilum	Williams 82 Cotyledon stage seed coat inner integument	Williams 82 Cotyledon stage seed coat outer integument	Williams 82 Cotyledon stage suspensor
0, 0.0830348, 0	0, 0.271585, 0	0.122087, 0.209222, 0	0, 0, 0.23851	0.104536, 0, 0.169928	0.110243, 0.0858942, 0.083188	0.249218, 0.532392, 0.291072	0.350176, 0.100402, 0	1.27496, 0.537918, 1.59899	0, 0, 0

Graph this experiment

GSE61857

Williams 82 Cotyledon Stage1	Williams 82 Cotyledon Stage2	Williams 82 Cotyledon Stage3	Williams 82 Leaf Stage1	Williams 82 Leaf Stage3	Williams 82 Leaf Stage5	Williams 82 Leaf Stage7	Williams 82 Leaf Stage8
1, 1, 1	2, 1, 1	1, 1, 1	4, 4, 4	1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1

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GSE67779

Wyandot resistant NIL 0 hr aphid exposure	Wyandot resistant NIL 24 hr aphid exposure	Wyandot resistant NIL 4 hr aphid exposure	Wyandot resistant NIL 48 hr aphid exposure	Wyandot resistant NIL 8 hr aphid exposure	Wyandot susceptible NIL 0 hr aphid exposure	Wyandot susceptible NIL 24 hr aphid exposure	Wyandot susceptible NIL 4 hr aphid exposure	Wyandot susceptible NIL 48 hr aphid exposure	Wyandot susceptible NIL 8 hr aphid exposure
11, 20	12, 4	18, 7	32, 11	11, 67	16, 19	31, 9	38, 13	16, 8	36, 13

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Affymetrix SoyChipI tissue, developmental and treatment expression patterns of Glyma15g42630

All values in intensity units

Glyma15g42630 is not represented on the SoyChip

Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below