SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62130 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:23004994-23006358 FORWARD LENGTH=454 | SoyBase | E_val: 0 | ISS |
| GO:0019450 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-cysteine catabolic process to pyruvate | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0080146 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-Cysteine desulfhydrase activity | SoyBase | N/A | ISS |
| KOG1549 | KOG | Cysteine desulfurase NFS1 | JGI | ISS | |
| PTHR11601 | Panther | CYSTEINE DESULFURYLASE | JGI | ISS | |
| PTHR11601:SF13 | Panther | NITROGEN FIXATION PROTEIN-RELATED | JGI | ISS | |
| PF00266 | PFAM | Aminotransferase class-V | JGI | ISS | |
| UniRef100_G7IBQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7IBQ9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LAT4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LAT4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g27800 not represented in the dataset |
Glyma10g27800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g137700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g27800.1 sequence type=CDS gene model=Glyma10g27800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAACACTTCCCGAAACCCCCACCGTTTCCCCCATGGAAAACGAAAACACCATCCTCCGAAACGGCACCGCCAAGAAACCCAAGCTCACGCACGCCATTTCCGAGGCTGAGATCCGCGAAGAATTCTCCCACCACCAGCGCGGCGTCGCAAGAATCAACAACGGTAGCTTCGGCAGCTGCCCGCGCTCCGTCCTCAACGCACAGTCCATCTGGCAGCTCCGCTTCCTCCAGCATCCCGACGACTTCTACTTCAACTCGCTCCGCCCCGGCATCCTCGCCTCACGCGCCGCCATCAAAGATATCATCAATGCCGAACACGTGGACGACGTCTCGCTCGTCGACAACGCCACCACCGCCGCCGCCGTCGTCCTCCAGCAGATCGGCCGCCACTTCGTCCGCGGCCACTTTCACCGCAACGACGCCGTTGTGATGTTCCACTGCGCCTACCAGGCCGTCAAGAAATCCATCGAGGCTTACGTCACTCCCATCGGCGGCACCGTCGTCGAGGTCCAGCTCCCCTTCCCGGTCCGCTCCGAGGAAGAAATCGTAACGGAATTCAAGAAAGGCCTCGAGAATGGTAAACTCAACGGCGGAAAAGTTAGGTTAGCGGTAATCGATCATATAACTTCCATGCCTTCGGTCGTTCTCCCCGTTCGCGAATTAATTAGGGTTTGCAGAGAGCATGGAGTGGAACAGGTTTTCGTCGACGGCGCTCACGCCATTGGAAGCTTGCACGTTGACGTTAAAGAAATTGGAGCTGATTTTTACGTGAGTAATTTGTACAAGTGGTTTTTCTCGCCGCCTTCGGTGGCGTTTTTGTATTGTAAGGAAAAATCAAACGACGTGCACCACCCTGTCGTTTCCCAGGAGTACGGGAAGGGGTTACCGGTTGAAAGTGCGTGGGTTGGGATGCGTGACTATAGCCCGCAGCTCGTTGTGCCGTCGATTTTGGAGTTTGTGAATCGGTTTGAGGGTGGGATTGAGGGGATAATGAAGAGGAACCATGACGGGGTTGTGAAAATGGGGACAATGTTGGCGGAGTCTTGGGGAACGGTTCTAGGTTCGCCTCCTGAGATGTGTGCTAGCATGATTATGGTGGGGTTGCCTTCTAGGTTGTGTGTGATGAGTGATGATGATGCATTGAGGTTAAGATCCTACCTTAGGGTTTATCATGAAGTTGAAGTTCCTGTGTATTACCAGGCTTTGAGGAATGGTGATAGGGATCCTAGGGACAAGGATGGGTTTATAACTGGTTATGTAAGGATCTCTCACCAGGTTTATAATACTGTTGATGACTATGAGAGGCTTAAGACTGCGATTAATCAGCTTGTAGAGGACGGGAAAGTTTGCAGCGGGATTCCTACGGAGTGA
>Glyma10g27800.1 sequence type=predicted peptide gene model=Glyma10g27800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTLPETPTVSPMENENTILRNGTAKKPKLTHAISEAEIREEFSHHQRGVARINNGSFGSCPRSVLNAQSIWQLRFLQHPDDFYFNSLRPGILASRAAIKDIINAEHVDDVSLVDNATTAAAVVLQQIGRHFVRGHFHRNDAVVMFHCAYQAVKKSIEAYVTPIGGTVVEVQLPFPVRSEEEIVTEFKKGLENGKLNGGKVRLAVIDHITSMPSVVLPVRELIRVCREHGVEQVFVDGAHAIGSLHVDVKEIGADFYVSNLYKWFFSPPSVAFLYCKEKSNDVHHPVVSQEYGKGLPVESAWVGMRDYSPQLVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPEMCASMIMVGLPSRLCVMSDDDALRLRSYLRVYHEVEVPVYYQALRNGDRDPRDKDGFITGYVRISHQVYNTVDDYERLKTAINQLVEDGKVCSGIPTE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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