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Report for Sequence Feature Glyma10g27800

Feature Type:gene_model
Chromosome:Gm10
Start:36623213
stop:36629718
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g27800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62130AT Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:23004994-23006358 FORWARD LENGTH=454 SoyBaseE_val: 0ISS
GO:0019450GO-bp Annotation by Michelle Graham. GO Biological Process: L-cysteine catabolic process to pyruvate SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0080146GO-mf Annotation by Michelle Graham. GO Molecular Function: L-Cysteine desulfhydrase activity SoyBaseN/AISS
KOG1549 KOG Cysteine desulfurase NFS1 JGI ISS
PTHR11601Panther CYSTEINE DESULFURYLASE JGI ISS
PTHR11601:SF13Panther NITROGEN FIXATION PROTEIN-RELATED JGI ISS
PF00266PFAM Aminotransferase class-V JGI ISS
UniRef100_G7IBQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7IBQ9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LAT4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LAT4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g27800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g137700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g27800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g27800
>Glyma10g27800.1   sequence type=CDS   gene model=Glyma10g27800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACACTTCCCGAAACCCCCACCGTTTCCCCCATGGAAAACGAAAACACCATCCTCCGAAACGGCACCGCCAAGAAACCCAAGCTCACGCACGCCATTTCCGAGGCTGAGATCCGCGAAGAATTCTCCCACCACCAGCGCGGCGTCGCAAGAATCAACAACGGTAGCTTCGGCAGCTGCCCGCGCTCCGTCCTCAACGCACAGTCCATCTGGCAGCTCCGCTTCCTCCAGCATCCCGACGACTTCTACTTCAACTCGCTCCGCCCCGGCATCCTCGCCTCACGCGCCGCCATCAAAGATATCATCAATGCCGAACACGTGGACGACGTCTCGCTCGTCGACAACGCCACCACCGCCGCCGCCGTCGTCCTCCAGCAGATCGGCCGCCACTTCGTCCGCGGCCACTTTCACCGCAACGACGCCGTTGTGATGTTCCACTGCGCCTACCAGGCCGTCAAGAAATCCATCGAGGCTTACGTCACTCCCATCGGCGGCACCGTCGTCGAGGTCCAGCTCCCCTTCCCGGTCCGCTCCGAGGAAGAAATCGTAACGGAATTCAAGAAAGGCCTCGAGAATGGTAAACTCAACGGCGGAAAAGTTAGGTTAGCGGTAATCGATCATATAACTTCCATGCCTTCGGTCGTTCTCCCCGTTCGCGAATTAATTAGGGTTTGCAGAGAGCATGGAGTGGAACAGGTTTTCGTCGACGGCGCTCACGCCATTGGAAGCTTGCACGTTGACGTTAAAGAAATTGGAGCTGATTTTTACGTGAGTAATTTGTACAAGTGGTTTTTCTCGCCGCCTTCGGTGGCGTTTTTGTATTGTAAGGAAAAATCAAACGACGTGCACCACCCTGTCGTTTCCCAGGAGTACGGGAAGGGGTTACCGGTTGAAAGTGCGTGGGTTGGGATGCGTGACTATAGCCCGCAGCTCGTTGTGCCGTCGATTTTGGAGTTTGTGAATCGGTTTGAGGGTGGGATTGAGGGGATAATGAAGAGGAACCATGACGGGGTTGTGAAAATGGGGACAATGTTGGCGGAGTCTTGGGGAACGGTTCTAGGTTCGCCTCCTGAGATGTGTGCTAGCATGATTATGGTGGGGTTGCCTTCTAGGTTGTGTGTGATGAGTGATGATGATGCATTGAGGTTAAGATCCTACCTTAGGGTTTATCATGAAGTTGAAGTTCCTGTGTATTACCAGGCTTTGAGGAATGGTGATAGGGATCCTAGGGACAAGGATGGGTTTATAACTGGTTATGTAAGGATCTCTCACCAGGTTTATAATACTGTTGATGACTATGAGAGGCTTAAGACTGCGATTAATCAGCTTGTAGAGGACGGGAAAGTTTGCAGCGGGATTCCTACGGAGTGA
Predicted protein sequences of Glyma10g27800
>Glyma10g27800.1   sequence type=predicted peptide   gene model=Glyma10g27800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTLPETPTVSPMENENTILRNGTAKKPKLTHAISEAEIREEFSHHQRGVARINNGSFGSCPRSVLNAQSIWQLRFLQHPDDFYFNSLRPGILASRAAIKDIINAEHVDDVSLVDNATTAAAVVLQQIGRHFVRGHFHRNDAVVMFHCAYQAVKKSIEAYVTPIGGTVVEVQLPFPVRSEEEIVTEFKKGLENGKLNGGKVRLAVIDHITSMPSVVLPVRELIRVCREHGVEQVFVDGAHAIGSLHVDVKEIGADFYVSNLYKWFFSPPSVAFLYCKEKSNDVHHPVVSQEYGKGLPVESAWVGMRDYSPQLVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPEMCASMIMVGLPSRLCVMSDDDALRLRSYLRVYHEVEVPVYYQALRNGDRDPRDKDGFITGYVRISHQVYNTVDDYERLKTAINQLVEDGKVCSGIPTE*






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