Glyma06g36640 - SoyBase

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Report for Sequence Feature Glyma06g36640

Feature Type:	gene_model
Chromosome:	Gm06
Start:	38926056
stop:	38927926
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g36640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28280	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr1:9886297-9887395 REVERSE LENGTH=243	SoyBase	E_val: 2.00E-56	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1KDU4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDU4_SOYBN	SoyBase	E_val: 2.00E-170	ISS
UniRef100_Q9FZA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F3H9.7 protein n=3 Tax=Arabidopsis thaliana RepID=Q9FZA1_ARATH	SoyBase	E_val: 6.00E-53	ISS

Proteins Associated with Glyma06g36640

Locus	Gene Symbol	Protein Name
	VQ26	VQ motif containing protein gene 26

Expression Patterns of Glyma06g36640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g240300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g36640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g36640

Limit To All Plant Sequences

>Glyma06g36640.1   sequence type=CDS   gene model=Glyma06g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATCAACTTAAGGCTCCAAGAAACAGAAACCCCACCTTCCATGAACAACTCCCCAAGAAGCAATCTGAGCAACAACAACTGCACCAATAATAATAGCATTGGCATCCAAATCCCCACCACACCAAAAACCATTCCCAGATCTGACTCCACCACCAATCCTTACCCCACCACCTTTGTTCAAGCTGACACTTCCACTTTCAAACATGTTGTTCAGATGCTCACTGGCTCATCAGAAACCACAAATCCTCAACAGCAACTACAAGATCCAGTTCAACCACAATCATCATCATCCAAGAACTTCAACATCCCTCCAATGAAAACAACGCCAAAGAAGCAGCAAGGGTTCAAGCTCTATGAGAGGAGGAACAACAACAACCATCTCAAGAACACCCTCATGATCAACACCTTGGTCCCCAATTTTGCACACAGCTCAGGATTCTCCTCCTCCTCATCATCACCCTGCAACAAGCCAGAGATCCTCTCTCCAAGCTTGCTTGACTTCCCTTCCCTCACTCTCAGCAGCCCAGTCACTCCTTTGAATGATGACCCTTTTGACAAGTCCTCCTCATTACCTTCATTGGGAAGCACTTCTTCAGAGGAAGAGAGAGCCATAGCTGAAAAAGGGTTCTACTTGCATCCCTCTCCCATGTCTACTCCAAGAGACTTTGAGCCTCAGCTCTTGCCTTTGTTCCCTGTGACTTCACCTAGAGTTTCTGAGTCAACTACTTGA

Predicted protein sequences of Glyma06g36640

Limit To All Plant Sequences

>Glyma06g36640.1   sequence type=predicted peptide   gene model=Glyma06g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKINLRLQETETPPSMNNSPRSNLSNNNCTNNNSIGIQIPTTPKTIPRSDSTTNPYPTTFVQADTSTFKHVVQMLTGSSETTNPQQQLQDPVQPQSSSSKNFNIPPMKTTPKKQQGFKLYERRNNNNHLKNTLMINTLVPNFAHSSGFSSSSSSPCNKPEILSPSLLDFPSLTLSSPVTPLNDDPFDKSSSLPSLGSTSSEEERAIAEKGFYLHPSPMSTPRDFEPQLLPLFPVTSPRVSESTT*

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