Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Danzer et al. 2015, Plant Phys 168(3):1025-10352. > Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development |
Pelletier et al. 2017, PNAS DOI:/10.1073/pnas.1707957114 > LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development |
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Williams 82 unifolate 0 hr 4 F cold stress | Williams 82 unifolate 1 hr 4 F cold stress | Williams 82 unifolate 24 hr 4 F cold stress |
220, 300, 792 | 1126, 215, 358 | 267, 239, 874 |
Glaborus Clark shoot tip | Wild-type Clark shoot tip |
1.17 | 1.19 |
Williams cotyledon stage 1 | Williams cotyledon stage 2 | Williams cotyledon stage 3 | Williams cotyledon stage 4 | Williams cotyledon stage 5 | Williams cotyledon stage 6 | Williams cotyledon stage 7 |
0.57, 0.99 | 1.86, 1.29 | 1.57, 2.3 | 2.05, 1.8 | 1.21, 2.09 | 2.21, 0.65 | 1.83, 1.73 |
Williams 43 100-200 mg seed cotyledon | Williams 43 400-500 mg seed cotyledon | Williams 43 5-6 mg seed cotyledon | Williams 43 5-6 mg seed seed coat | Williams 43 5-6 mg whole seed | Williams 43 dry seed | Williams 43 whole seed 12-14 DAF | Williams 43 whole seed 22-24 DAF | Williams 43 whole seed 4 DAF |
3.28, 2.55 | 1.5, 1.45 | 1.3 | 0.33 | 1.55, 1.23 | 0.11, 0.09 | 0.52, 0.34 | 0.31, 1.07 | 0.37, 0.35 |
Williams 82 Early Maturation Stage Axis Parenchyma | Williams 82 Early Maturation Stage Axis Vasculature | Williams 82 Early Maturation Stage Cotyledon Abaxial Epidermis | Williams 82 Early Maturation Stage Cotyledon Vasculature | Williams 82 Early Maturation Stage Endosperm | Williams 82 Early Maturation Stage Seed Coat Hilum | Williams 82 Early Maturation Stage Seed Coat Hourglass Cells | Williams 82 Early Maturation Stage Seed Coat Palisade | Williams 82 Early Maturation Stage Seed Coat Parenchyma | Williams 82 Early maturation stage embryonic axis SAM | Williams 82 Early maturation stage embryonic axis epidermis | Williams 82 Early maturation stage embryonic axis plumule | Williams 82 Early maturation stage embryonic axis root tip | Williams 82 Early maturation stage embryonic axis stele | Williams 82 Early maturation stage embryonic cotyledon abaxial parenchyma | Williams 82 Early maturation stage embryonic cotyledon adaxial epidermis | Williams 82 Early maturation stage embryonic cotyledon adaxial parenchyma |
5, 4, 3 | 3, 3, 4 | 1, 8, 1 | 3, 1 | 0, 2, 1 | 4, 3, 5 | 7, 8, 14 | 9, 5, 4 | 5, 6, 8 | 0, 0, 0 | 1, 5, 3 | 6, 2, 4 | 3, 3, 2 | 4, 4, 4 | 12, 7, 9 | 7, 2, 1 | 18, 8, 8 |
Hutchesen high vapor pressure deficit | Hutchesen low vapor pressure deficit | PI 416937 high vapor pressure deficit | PI 416937 low vapor pressure deficit | PI 471938 high vapor pressure deficit | PI 471938 low vapor pressure deficit |
2.832, 6.821 | 2.489, 2.819 | 6.373, 3.787 | 2.008, 4.587 | 3.741, 4.144 | 2.891, 2.998 |
Clark mutant seed coat | Clark wild type seed coat | Harsoy mutant seed coat | Harsoy wild type seed coat |
10.04, 3.09, 3.85 | 3.63, 3.5, 4.18 | 6.54, 4.18 | 2.89, 5.5, 2.59 |
Williams 82 Control | Williams 82 dehydration 12hr | Williams 82 dehydration 1hr | Williams 82 dehydration 6hr | Williams 82 saline 12hr | Williams 82 saline 1hr | Williams 82 saline 6hr |
128.09, 208.93, 155.75 | 121.44, 120.43, 185.41 | 75.11, 99.06, 123.15 | 171.63, 126.15, 115.1 | 201.7, 222.02, 300.03 | 171.88, 133.5, 141.34 | 203.65, 142.83, 335.03 |
Williams 82 Globular stage embryo | Williams 82 Globular stage endosperm | Williams 82 Globular stage seed coat endothelium | Williams 82 Globular stage seed coat epidermis | Williams 82 Globular stage seed coat hilum | Williams 82 Globular stage seed coat inner integument | Williams 82 Globular stage seed coat outer integument | Williams 82 Globular stage suspensor |
0.300497, 0.110345, 0.119544 | 0, 0.275157, 0 | 0.089747, 0, 0.0747559 | 0.966755, 0.798654, 1.89756 | 0.28159, 0.757633, 0.384969 | 0.101919, 0.190169, 0.271963, 0.337285 | 1.38585, 2.70114, 2.01248 | 0.686114, 12.479, 2.24178 |
Williams 82 Heart stage embryo | Williams 82 Heart stage endosperm | Williams 82 Heart stage seed coat endothelium | Williams 82 Heart stage seed coat epidermis | Williams 82 Heart stage seed coat hilum | Williams 82 Heart stage seed coat inner integument | Williams 82 Heart stage seed coat outer integument | Williams 82 Heart stage suspensor |
0.713192, 0.10594, 0.318933 | 0.93233, 0.319713, 0.629211 | 0, 0, 0.170511 | 0.957988, 0.485107, 0.865802 | 0.0915456, 0.65172, 0.235452 | 0.125994, 0, 0.185237 | 3.29116, 1.65351, 1.47245 | 1.7921, 2.97676, 3.11377 |
Williams 82 Cotyledon stage embryo | Williams 82 Cotyledon stage embryo axis | Williams 82 Cotyledon stage embryo cotyledon | Williams 82 Cotyledon stage endosperm | Williams 82 Cotyledon stage seed coat endothelium | Williams 82 Cotyledon stage seed coat epidermis | Williams 82 Cotyledon stage seed coat hilum | Williams 82 Cotyledon stage seed coat inner integument | Williams 82 Cotyledon stage seed coat outer integument | Williams 82 Cotyledon stage suspensor |
2.22156, 2.57408, 5.38222 | 1.5181, 0.181057, 0.80392 | 4.02886, 3.87062, 3.17482 | 0.262978, 0.517637, 0.636026 | 0.313607, 0.680464, 0 | 1.21267, 0.601259, 1.33101 | 0.581509, 1.53802, 0.582144 | 0, 0.100402, 0.0816645 | 1.27496, 2.15167, 2.09868 | 6.09205, 3.27325, 3.31581 |
Williams 82 Cotyledon Stage1 | Williams 82 Cotyledon Stage2 | Williams 82 Cotyledon Stage3 | Williams 82 Leaf Stage1 | Williams 82 Leaf Stage3 | Williams 82 Leaf Stage5 | Williams 82 Leaf Stage7 | Williams 82 Leaf Stage8 |
4, 6, 5 | 6, 6, 7 | 7, 7, 7 | 6, 5, 6 | 6, 5, 5 | 6, 7, 6 | 7, 7, 6 | 6, 5, 7 |
Wyandot resistant NIL 0 hr aphid exposure | Wyandot resistant NIL 24 hr aphid exposure | Wyandot resistant NIL 4 hr aphid exposure | Wyandot resistant NIL 48 hr aphid exposure | Wyandot resistant NIL 8 hr aphid exposure | Wyandot susceptible NIL 0 hr aphid exposure | Wyandot susceptible NIL 24 hr aphid exposure | Wyandot susceptible NIL 4 hr aphid exposure | Wyandot susceptible NIL 48 hr aphid exposure | Wyandot susceptible NIL 8 hr aphid exposure |
224, 93 | 65, 93 | 236, 130 | 122, 66 | 173, 365 | 208, 105 | 282, 85 | 241, 139 | 66, 52 | 212, 214 |
Soybean strain 2601R | Soybean strain Bayfield | Soybean strain Mandarin | Soybean strain PS46R | Soybean strain S03W4 |
21, 15, 24, 22, 40 | 19, 19, 20, 21, 27 | 25, 19, 21, 13, 17 | 20, 19, 24, 25, 29 | 34, 25, 29, 23, 24 |
pooled soybean leaves inoculated with HW94-1 harvested 12hours | pooled soybean leaves inoculated with HW94-1 harvested 24 hours | pooled soybean leaves inoculated with HW94-1 harvested 48 hours | pooled soybean leaves inoculated with HW94-1 harvested 6 hours | pooled soybean leaves inoculated with TW72-1 harvested 12 hours | pooled soybean leaves inoculated with TW72-1 harvested 24 hours | pooled soybean leaves inoculated with TW72-1 harvested 48 hours | pooled soybean leaves inoculated with TW72-1 harvested 6 hours | pooled soybean leaves mock- inoculated harvested time 0 |
45, 28, 34 | 128, 101 | 65, 136, 154 | 26, 22, 35 | 39, 26, 37 | 94, 88 | 93, 108, 132 | 26, 22, 33 | 113, 108, 111 |
First trifoliolate leaf, 48h after sprayed with lipo-chitooligosaccharide (NOD factor) | First trifoliolate leaf, 48h after sprayed with water control |
24, 28, 24 | 43, 34, 46 |
Glycine max rust inoculated leaf (Treatment) | Glycine max uninoculated leaf (Control) |
59.4411, 75.0749, 34.9673 | 43.3179, 71.2694, 89.7012 |
Asgrow A3237 early maturation-stage axis epidermis captured by LCM | Asgrow A3237 early maturation-stage axis parenchyma captured by LCM | Asgrow A3237 early maturation-stage axis plumule captured by LCM | Asgrow A3237 early maturation-stage axis root meristem captured by LCM | Asgrow A3237 early maturation-stage axis shoot meristem captured by LCM | Asgrow A3237 early maturation-stage axis vascular bundle captured by LCM | Asgrow A3237 early maturation-stage cotyledon abaxial epidermis captured by LCM | Asgrow A3237 early maturation-stage cotyledon abaxial parenchyma captured by LCM | Asgrow A3237 early maturation-stage cotyledon adaxial epidermis captured by LCM | Asgrow A3237 early maturation-stage cotyledon adaxial parenchyma captured by LCM | Asgrow A3237 early maturation-stage cotyledon vascular bundle captured by LCM | Asgrow A3237 early maturation-stage seed | Asgrow A3237 early maturation-stage seed coat aleurone captured by LCM | Asgrow A3237 early maturation-stage seed coat hilum captured by LCM | Asgrow A3237 early maturation-stage seed coat hourglass captured by LCM | Asgrow A3237 early maturation-stage seed coat palisade captured by LCM | Asgrow A3237 early maturation-stage seed coat parenchyma captured by LCM |
646.7, 190.9 | 136.2, 23.8 | 299.7, 500.8 | 245.1, 131.3 | 83.1, 89.2 | 324, 160.8 | 268.4, 128.3 | 520.3, 470.6 | 210.8, 194.6 | 341.9, 244.4 | 322.8, 116.4 | 300.7, 331.7 | 139.8, 119.7 | 663.5, 381.3 | 651.1, 384 | 151.8, 175.9 | 192.6, 250.8 |
Asgrow A3237 globular stage embryo proper captured by LCM | Asgrow A3237 globular stage endosperm captured by LCM | Asgrow A3237 globular stage endothelium captured by LCM | Asgrow A3237 globular stage epidermis captured by LCM | Asgrow A3237 globular stage hilum captured by LCM | Asgrow A3237 globular stage inner integument captured by LCM | Asgrow A3237 globular stage outer integument captured by LCM | Asgrow A3237 globular stage seed | Asgrow A3237 globular stage suspensor captured by LCM |
85.9, 110.9, 204.5 | 171.6, 120.5, 78.3 | 49.3, 99.4, 68.6 | 317.1, 17.8, 274.1 | 160.4, 45.3, 229 | 472.1, 150.3, 348.5 | 39.3, 83.5, 17.2 | 89, 64.5 | 30.2, 68.9, 186.1 |
Asgrow A3237 heart stage embryo proper captured by LCM | Asgrow A3237 heart stage endosperm captured by LCM | Asgrow A3237 heart stage endothelium captured by LCM | Asgrow A3237 heart stage epidermis captured by LCM | Asgrow A3237 heart stage hilum captured by LCM | Asgrow A3237 heart stage inner integument captured by LCM | Asgrow A3237 heart stage outer integument captured by LCM | Asgrow A3237 heart stage seed | Asgrow A3237 heart stage suspensor captured by LCM | Asgrow A3237 leaf |
226.2, 74.6, 81.7 | 444.4, 171.4, 170.8 | 30.1, 53.6 | 246.8, 95.4 | 31.9, 31.5 | 164, 299.4 | 27.5, 253.3 | 99.4, 83.2 | 51.9, 127.1, 110.5 | 26.8, 194.9 |
Asgrow A3237 cotyledon stage embryo proper captured by LCM | Asgrow A3237 cotyledon stage endosperm captured by LCM | Asgrow A3237 cotyledon stage endothelium captured by LCM | Asgrow A3237 cotyledon stage epidermis captured by LCM | Asgrow A3237 cotyledon stage hilum captured by LCM | Asgrow A3237 cotyledon stage inner integument captured by LCM | Asgrow A3237 cotyledon stage outer integument captured by LCM | Asgrow A3237 cotyledon stage seed | Asgrow A3237 cotyledon stage suspensor captured by LCM |
179.1, 26.7 | 104.4, 19.9 | 17.7, 47.8 | 55.7, 190.4 | 174.1, 313.7 | 152, 71.2 | 261.4, 254.8 | 128.9, 109.9 | 149.4, 257.7 |
Soybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar ATHOW - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar ATHOW - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar GENERAL - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar GENERAL - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar OX20-8 - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar OX20-8 - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar PI291327 - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar PI291327 - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar V710370 - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar V710370 - P.sojae Inoculated: 72 hours post inoculation | Soybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar WILLIAMS - P.sojae Inoculated: 120 hours post inoculation | Soybean cultivar WILLIAMS - P.sojae Inoculated: 72 hours post inoculation |
40, 59, 67, 82 | 80, 84, 70, 70 | 126, 106, 106, 80 | 132, 129, 104, 107 | 58, 55, 43, 58 | 80, 67, 85, 65 | 111, 138, 109, 105 | 100, 117, 100, 115 | 87, 63, 70, 61 | 75, 76, 78, 81 | 97, 115, 101, 117 | 121, 116, 110, 133 | 56, 41, 48, 42 | 75, 72, 63, 70 | 66, 55, 55, 48 | 68, 74, 104, 88 | 59, 36, 56, 39 | 69, 74, 72, 68 | 132, 102, 107, 112 | 94, 114, 89, 118 | 48, 50, 35, 19 | 80, 72, 62, 91 | 82, 89, 86, 80 | 103, 85, 92, 126 | 70, 49, 66, 45 | 79, 76, 84, 73 | 103, 122, 112, 94 | 155, 130, 138, 121 | 57, 66, 71, 63 | 101, 79, 69, 75 | 124, 116, 103, 138 | 129, 136, 130, 108 |
Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculation | Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculation | Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 24 hours post inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 48 hours post inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculation | Soybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 24 hours post inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 48 hours post inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculation | Soybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculation | Soybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 24 hours post inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 48 hours post inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculation | Soybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculation | Soybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculation | Soybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 24 hours post inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 48 hours post inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculation | Soybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation |
80, 84, 82, 87 | 92, 100, 108, 80 | 107, 126, 87, 89 | 104, 110, 80, 86 | 145, 130, 127, 124 | 91, 86, 95, 97 | 124, 126, 109, 106 | 114, 149, 123, 134 | 160, 197, 139, 179 | 99, 130, 82, 64 | 71, 87, 90, 80 | 104, 97, 75, 121 | 93, 122, 100, 100 | 112, 79, 81, 113 | 85, 93, 133, 123 | 87, 93, 96, 97 | 122, 89, 87, 103 | 147, 145, 116, 80 | 99, 83, 125, 157 | 91, 88, 130, 61 | 89, 83, 70, 89 | 84, 93, 117, 104 | 108, 113, 103, 131 | 93, 84, 111, 91 | 125, 122, 147, 137 | 98, 102, 96, 98 | 125, 93, 141, 105 | 181, 141, 155, 185 | 171, 103, 176, 178 | 116, 141, 94, 94 | 53, 67, 64, 52 | 88, 114, 104, 96 | 104, 76, 116, 95 | 62, 65, 85, 82 | 129, 100, 133, 101 | 85, 36, 72, 82 | 101, 131, 114, 130 | 153, 119, 161, 150 | 116, 136, 157, 104 | 92, 127, 86, 96 |
Shoot apical meristem after one short-day treatment | Vegetative shoot apical meristem | shoot apical meristem from soybean subjected to 4 complete short-day cycles | shoot apical meristem from soybean under 4 complete short-day treatment | shoot apical meristem micro-dissected from 2 short-day treated soybean plants | shoot apical meristem micro-dissected from soybean plants after 6 short-day treatment | shoot apical meristem micro-dissected from soybean treated with 1 short-day | shoot apical meristems from 2 short-day treated soybean | soybean shoot apical meristem subjected to 6 complete short-day cycles | soybean shoot apical meristem, vegetative |
93 | 133 | 6.85643, 115, 115 | 87 | 107 | 100 | 6.29755, 78, 78 | 6.5362, 92, 92 | 7.38372, 167, 167 | 6.65881, 101, 101 |
Microdissected shoot apical mersitem | non-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leaves | non-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leaves from 10-day-old soybean plant | vegetative axillary meristem |
37, 37 | 72 | 94 | 41, 40 |
2nd trifoliate of iron deficient plant | 2nd trifoliate of iron sufficient plant |
166, 113, 190, 170, 113 | 244, 148, 137, 188, 209, 95 |
Mature pollen grains from soybean | Sporophytic tissues from soybean |
6, 6, 6 | 32, 10 |
150mg cotyledon RNAiOle rep 3 | 150mg nontransgenic soybean seed, rep2 | cotyledon soybean | transgenic 150mg cotyledon RNAi0le-2 | transgenic RNAiOle1 | transgenic RNAioleosin cotyledon bio rep 2 tech rep2 |
593.303 | 369.47 | 470.284 | 375.789 | 362.293 | 536.904 |
150 mg RNAi cotyledon with suppressed storage proteins | 150mg RNAiSP- cotyledon biol rep 1 tech rep1 | 150mg RNAiSP- soybean cotyledon | 150mg cotyledon RNAiSP biol rep 2 tech rep 2 | 150mg cotyledon, wt nontransgenic control | 150mg nontransgenic soybean cotyledon |
262.968 | 294.489 | 284.126 | 264.065 | 487.408 | 373.285 |
root after 0.5h stress | root after 12h stress | root after 1h stress | root after 24h stress | root after 3h stress | root after 6h stress | root at 0h as control |
121.51, 138.9 | 126.16, 120.67 | 159.02, 109.38 | 221.37, 210.61 | 196.68, 210.74 | 231.79, 241.87 | 245.3, 279.97 |
One centimeter long tap root tip of soybean genotype PI 416937 | One centimeter long tap root tip of soybean genotype PI 416937 treated with Al |
241.596, 117.939, 156.076, 135.827, 143.151, 189.738, 174.684, 108.196, 324.922, 185.046, 140.71 | 166.543, 252.444, 166.748, 104.302, 174.514, 261.928, 346.792, 200.637, 148.67, 208.167, 192.418 |
One centimeter long tap root tip of soybean genotype PI 416937, Al, 12hr | One centimeter long tap root tip of soybean genotype PI 416937, Al, 2hr | One centimeter long tap root tip of soybean genotype PI 416937, Al, 48hr | One centimeter long tap root tip of soybean genotype PI 416937, Al, 72hr | One centimeter long tap root tip of soybean genotype PI 416937, untreated, 12hr | One centimeter long tap root tip of soybean genotype PI 416937, untreated, 2hr | One centimeter long tap root tip of soybean genotype PI 416937, untreated, 48hr | One centimeter long tap root tip of soybean genotype PI 416937, untreated, 72hr | One centimeter long tap root tip of soybean genotype Young, Al, 12hr | One centimeter long tap root tip of soybean genotype Young, Al, 2hr | One centimeter long tap root tip of soybean genotype Young, Al, 48hr | One centimeter long tap root tip of soybean genotype Young, Al, 72hr | One centimeter long tap root tip of soybean genotype Young, untreated, 12hr | One centimeter long tap root tip of soybean genotype Young, untreated, 2hr | One centimeter long tap root tip of soybean genotype Young, untreated, 48hr | One centimeter long tap root tip of soybean genotype Young, untreated, 72hr |
167.914, 113.726, 180.653 | 174.247, 256.172 | 280.152, 379.418, 214.58 | 147.951, 214.465, 195.968 | 161.65, 143.726, 152.765 | 243.543, 130.208 | 212.023, 169.094, 110.866 | 315.794, 196.084, 152.072 | 204.327, 165.968, 214.618 | 238.405, 260.261 | 356.471, 569.855, 210.653 | 301.479, 384.382, 343.402 | 174.416, 228.719, 192.239 | 141.862, 340.249 | 280.45, 233.762, 185.714 | 213.76, 310.66, 285.685 |
One centimeter long root tip of soybean genotype PI 416937, Al + Mg, 12hr | One centimeter long root tip of soybean genotype PI 416937, Al + Mg, 72hr | One centimeter long root tip of soybean genotype PI 416937, Al, 12hr | One centimeter long root tip of soybean genotype PI 416937, Al, 72hr | One centimeter long root tip of soybean genotype Young, Al + Mg, 12hr | One centimeter long root tip of soybean genotype Young, Al + Mg, 72hr | One centimeter long root tip of soybean genotype Young, Al, 12hr | One centimeter long root tip of soybean genotype Young, Al, 72hr |
227.098, 240.572, 274.664 | 309.019, 283.121, 215.11 | 306.803, 261.791, 221.91 | 513.09, 399.877, 470.111 | 240.734, 231.039, 295.713 | 412.425, 345.877, 385.088 | 256.933, 284.28, 277.327 | 539.617, 722.661, 615.857 |
Soybean leaf | Soybean nodule | Soybean root |
181.9, 168.7, 134.2 | 1714, 1699, 1844 | 571.7, 576.8, 604.4 |
entrained soybean seed 24h light | entrained soybean seed 28h light | entrained soybean seed 32h light | entrained soybean seed 36h light | entrained soybean seed 40h light | entrained soybean seed 44h light | entrained soybean seed 48h light | entrained soybean seed 52h light | entrained soybean seed 56h light | entrained soybean seed 60h light | entrained soybean seed 64h light | entrained soybean seed 68h light | entrained soybean seed 72h light |
31, 46 | 36, 58 | 46, 56 | 36, 43 | 42, 42 | 42, 46 | 60, 45 | 45, 50 | 57, 31 | 44, 32 | 54, 29 | 43, 51 | 57, 45 |
Soybean trifoliates harvested 48 h after foliar spray with LCO | Soybean trifoliates harvested 48 h after foliar spray with distilled water | Soybean trifoliates harvested immediately after foliar spray with LCO | Soybean trifoliates harvested immediately after foliar spray with distilled water |
49, 45, 51 | 51, 51, 51 | 46, 46, 35 | 47, 42, 36 |
soybean seed green and fully grown | soybean seed when the bean's length is 5mm |
13.9271, 11.5411 | 33.6394, 28.0514 |
Clark 10 day roots, Fe limited | Clark 10 day roots, Fe sufficient | Clark 14 day roots, Fe recovery | Clark 14 day roots, Fe sufficient | IsoClark 10 day roots, Fe limited | IsoClark 10 day roots, Fe sufficient | IsoClark 14 day roots, Fe recovery | IsoClark 14 day roots, Fe sustained |
653, 407, 491 | 450, 723, 564 | 588, 478, 550 | 362, 448, 421 | 774, 789, 612 | 733, 682, 644 | 740, 567, 655 | 601, 587, 677 |
palisade mesophyll parenchyma cells | paraveinal mesophyll cells |
3.49999, 1.13126, 8.55771 | 23.4818, 4.95138, 1.08944 |
mature leaf 30 day control | mature leaf day 0 control | mature leaf day 15 control | mature leaf day 15 de-tipped leaflet | mature leaf day 20 control | mature leaf detip-retip 20 day | mature leaf detip-retip 30 day | mmature leaf detip-retip 20 day |
34.3865, 55.4997, 33.3265 | 45.2264, 57.9703, 54.3056, 54.9629 | 19.7313, 34.747, 46.928 | 66.3579, 70.9688, 41.704 | 30.0586, 36.5454, 34.6278 | 37.3595, 11.5425 | 69.8067, 82.6178, 56.9029 | 26.218 |
root hair cells, inoculated, 12 hr | root hair cells, inoculated, 18 hr | root hair cells, inoculated, 24 hr | root hair cells, inoculated, 36 hr | root hair cells, inoculated, 48 hr | root hair cells, inoculated, 6 hr | root hair cells, mock, 12 hr | root hair cells, mock, 18 hr | root hair cells, mock, 24 hr | root hair cells, mock, 36 hr | root hair cells, mock, 48 hr | root hair cells, mock, 6 hr |
114, 119, 166, 142 | 125, 114, 133, 117 | 34, 47, 40 | 52, 98, 51 | 85, 73, 51 | 181, 106, 116, 178 | 179, 149, 137, 184 | 130, 149, 104, 176 | 27, 24, 26 | 35, 66, 21 | 45, 43, 34 | 125, 112, 142, 137 |
Glycine max leaf, 20% inhibition | Glycine max leaf, 30% inhibition | Glycine max leaf, baseline | Glycine max leaf, optimum |
109.478, 205.751, 236.951, 117.491 | 161.17, 239.657, 164.947, 197.136 | 439.824, 388.842, 283.485, 402.22 | 188.58, 160.911, 178.07, 186.388 |
Black soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed development | Brown soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed development |
75, 62, 95 | 75, 80, 81 |
2mm pod with seed | 5mm soybean seed | Fully grown green seed | Pod at Pod elongation stage |
47.1544, 16.6732 | 26.8939, 25.944 | 20.3733, 14.7741 | 22.7647, 30.4959 |
0.5 mm root tip | non-meristematic tissues |
81.5, 107.5, 82.4 | 49.3, 106.1 |
GmMPK4-silenced Williams 82 trifoliolate leaves, petioles and stem segments | Williams 82 trifoliolate leaves, petioles and stem segments |
242.08, 226.77, 237.97, 234.3 | 55.492, 81.817, 85.929, 80.42 |
leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 12 hai) | leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 144 hai) | leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 216 hai) | leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 24 hai) | leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 288 hai) | leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 72 hai) | leaf (pathogen isolates: Mock - time: 12 hai) | leaf (pathogen isolates: Mock - time: 144 hai) | leaf (pathogen isolates: Mock - time: 216 hai) | leaf (pathogen isolates: Mock - time: 24 hai) | leaf (pathogen isolates: Mock - time: 288 hai) | leaf (pathogen isolates: Mock - time: 72 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 12 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 144 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 216 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 24 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 288 hai) | leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 72 hai) |
114.72, 61.918, 65.95 | 227.3, 180.21, 197.57 | 237.54, 101.99, 193.49 | 78.423, 112.49, 110.75 | 138.47, 174.86, 157.07 | 132.81, 152.48, 97.932 | 109.08, 85.046, 54.843 | 169.35, 97.548, 117.55 | 166.79, 134.29, 142.52 | 192.17, 169.68, 78.385 | 129.4, 180.44, 149.7 | 131.54, 151.48, 165.72 | 37.487, 75.214, 78.49 | 172.69, 159.46, 125.25 | 274.86, 139.11, 242.65 | 198.16, 92.8, 140.14 | 190.73, 177.09, 178.18 | 172.53, 117.67, 178.11 |
leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 12 hai) | leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 144 hai) | leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 216 hai) | leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 24 hai) | leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 288 hai) | leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 72 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 12 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 144 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 216 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 24 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 288 hai) | leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 72 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 12 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 144 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 216 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 24 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 288 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 72 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 12 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 144 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 216 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 24 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 288 hai) | leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 72 hai) | leaf (genotype:Williams 82 - pathogen inoculation: Mock - time: 216 hai) |
112.82, 79.878, 107.4 | 230.85, 186.75, 257.15 | 303.89, 319.86, 294.13 | 235.17, 154.86, 84.678 | 226.16, 159.73, 238.76 | 157.68, 178.59, 217.7 | 77.078, 71.271, 66.686 | 225.21, 175.75, 160.15 | 194.18, 183.38, 330.42 | 184.71, 162.67, 168.14 | 236.17, 285.36, 268.05 | 162.19, 136.79, 142.33 | 169.45, 244.4, 213.17 | 310.93, 301.65, 356.75 | 223.28, 268.42, 177.91 | 352.77, 327.91, 163.81 | 188.37, 168, 259.08 | 332.54, 344.45, 202.81 | 134.98, 97.908, 168.38 | 240.93, 285.42, 233.32 | 204.75, 200.1 | 258.36, 158.96, 290.31 | 261.72, 346.35, 257.44 | 178.19, 258.84, 134 | 272.18 |
msh1 RNAi stunted line | msh1 RNAi variegated line | wild type |
85, 72, 109 | 35, 38, 36 | 47, 41, 41, 52 |
HiProt seed 100-200 mg | HiProt seed 200-300 mg | HiProt seed 25-50 mg | HiProt seed 50-100 mg | LoProt seed 100-200 mg | LoProt seed 200-300 mg | LoProt seed 25-50 mg | LoProt seed 50-100 mg |
318.45, 260.53, 201.19 | 304.51, 333.29, 224 | 121.29, 167.85, 195.62 | 191.29, 216.09, 237.39 | 264.62, 248.51, 256.3 | 298.32, 225.92, 276.69 | 120.99, 202.06, 215.5 | 261.61, 274.04, 198.98 |
Embrapa48 Leaf 12 HAI ASR infection | Embrapa48 Leaf 12 HAI mock infection | Embrapa48 Leaf 120 HAI ASR infection | Embrapa48 Leaf 120 HAI mock infection | Embrapa48 Leaf 168 HAI ASR infection | Embrapa48 Leaf 168 HAI mock infection | Embrapa48 Leaf 18 HAI ASR infection | Embrapa48 Leaf 18 HAI mock infection | Embrapa48 Leaf 24 HAI ASR infection | Embrapa48 Leaf 24 HAI mock infection | Embrapa48 Leaf 36 HAI ASR infection | Embrapa48 Leaf 36 HAI mock infection | Embrapa48 Leaf 48 HAI ASR infection | Embrapa48 Leaf 48 HAI mock infection | Embrapa48 Leaf 6 HAI ASR infection | Embrapa48 Leaf 6 HAI mock infection | Embrapa48 Leaf 72 HAI ASR infection | Embrapa48 Leaf 72 HAI mock infection | Embrapa48 Leaf 96 HAI ASR infection | Embrapa48 Leaf 96 HAI mock infection | PI 230970 Leaf 12 HAI ASR infection | PI 230970 Leaf 12 HAI mock infection | PI 230970 Leaf 120 HAI ASR infection | PI 230970 Leaf 120 HAI mock infection | PI 230970 Leaf 168 HAI ASR infection | PI 230970 Leaf 168 HAI mock infection | PI 230970 Leaf 18 HAI ASR infection | PI 230970 Leaf 18 HAI mock infection | PI 230970 Leaf 24 HAI ASR infection | PI 230970 Leaf 24 HAI mock infection | PI 230970 Leaf 36 HAI ASR infection | PI 230970 Leaf 36 HAI mock infection | PI 230970 Leaf 48 HAI ASR infection | PI 230970 Leaf 48 HAI mock infection | PI 230970 Leaf 6 HAI ASR infection | PI 230970 Leaf 6 HAI mock infection | PI 230970 Leaf 72 HAI ASR infection | PI 230970 Leaf 72 HAI mock infection | PI 230970 Leaf 96 HAI ASR infection | PI 230970 Leaf 96 HAI mock infection |
76.828, 80.915, 90.27 | 83.339, 101.54, 83.596 | 65.051, 66.091, 53.785 | 65.603, 28.629, 51.536 | 103.69, 81.371, 76.512 | 62.799, 69.541, 75.679 | 103.2, 75.359, 79.068 | 96.814, 91.952, 101.86 | 75.4, 42.907, 63.145 | 72.186, 50.101, 62.975 | 88.121, 85.788, 82.467 | 86.075, 70.271, 79.902 | 35.874, 71.372, 67.968 | 23.551, 59.317, 72.921 | 45.07, 43.613, 73.139 | 61.078, 74.669, 62.875 | 45.067, 67.052, 88.631 | 81.606, 92.753, 79.134 | 55.887, 41.444, 74.086 | 55.276, 44.623, 64.402 | 72.007, 81.538, 69.008 | 132.4, 72.34, 69.964 | 76.94, 75.725, 76.766 | 61.633, 52.695, 55.746 | 57.068, 79.639, 79.67 | 82.139, 85.667, 70.53 | 95.311, 62.059, 91.395 | 106.28, 103.65, 78.802 | 67.319, 73.451, 72.499 | 55.234, 61.442, 76.022 | 100.22, 77.304, 91.551 | 63.949, 69.62, 117.21 | 30.729, 43.917, 65.471 | 45.095, 55.493, 47.936 | 75.925, 60.067, 66.18 | 71.415, 48.206, 65.469 | 72.372, 53.965, 65.652 | 58.943, 91.599, 61.46 | 89.779, 64.614, 80.267 | 88.6, 82.554, 73.348 |
LD05-16060 resistant Leaf day1 aphids | LD05-16060 resistant Leaf day1 control | LD05-16060 resistant Leaf day7 aphids | LD05-16060 resistant Leaf day7 control | LD05-16060 resistant leaf day1 control | SD01-76 susceptible Leaf day7 control | SD01-76 susceptible leaf day7 control | SD01-76R susceptible Leaf day1 aphids | SD01-76R susceptible Leaf day1 control | SD01-76R susceptible Leaf day7 aphids |
204, 171, 146 | 182, 157 | 189, 172, 176 | 221, 178, 168 | 164 | 147 | 164, 208 | 157, 149, 81 | 129, 180, 131 | 151, 189, 244 |
14 day salinity stressed seedlings | 14 day seedlings mock stressed |
432 | 347 |
BPMV treated trifoliolate leaves, petioles and stem segments | BPMV-LRR treated trifoliolate leaves, petioles and stem segments |
202.65, 206.29, 505.08 | 193.3, 105.3 |
Download query results HERE
Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your
query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example),
you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have
converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.
To convert your gene model ID click the SUBMIT button below
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||