Glyma02g40310 - SoyBase

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Report for Sequence Feature Glyma02g40310

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45529556
stop:	45533691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20920	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 beta subunit \| chr5:7094994-7096661 REVERSE LENGTH=268	SoyBase	E_val: 1.00E-135	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2768	KOG	Translation initiation factor 2, beta subunit (eIF-2beta)	JGI		ISS
PTHR23001	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR	JGI		ISS
PF01873	PFAM	Domain found in IF2B/IF5	JGI		ISS
UniRef100_G7K0U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2 subunit n=1 Tax=Medicago truncatula RepID=G7K0U8_MEDTR	SoyBase	E_val: 3.00E-146	ISS
UniRef100_I1JHM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JHM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g40310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40310

Paralog	Evidence	Comments
Glyma14g38600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g236700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g40310

Limit To All Plant Sequences

>Glyma02g40310.1   sequence type=CDS   gene model=Glyma02g40310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAGATTACAATTGTAGATCCTGCTGATGACCCTGTGGAGAAATTGGCTGAGAAGACAGAAAACCTCTCAGTTTCTGAGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAATTGGGTACAAGTGGCTCCCTTGATGGACAGCAGAGATTGGTTGTAAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAG

Predicted protein sequences of Glyma02g40310

Limit To All Plant Sequences

>Glyma02g40310.1   sequence type=predicted peptide   gene model=Glyma02g40310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADDPVEKLAEKTENLSVSEGVETAFAGLKKKKKKPVEMSNLNDESGDANEDLDDHPEDDEGEVVAPEARYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT*

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