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Integrating Genetics and Genomics to Advance Soybean Research



SoyBase Expression Explorer
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model,
and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Danzer et al. 2015, Plant Phys 168(3):1025-10352.
> Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development
Pelletier et al. 2017, PNAS DOI:/10.1073/pnas.1707957114
> LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development

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All values in RPMK or FPMK

GSE117686

Williams 82 unifolate 0 hr 4 F cold stressWilliams 82 unifolate 1 hr 4 F cold stressWilliams 82 unifolate 24 hr 4 F cold stress
2673, 1775, 18163012, 2158, 18312910, 2070, 1869
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GSE33155

Glaborus Clark shoot tipWild-type Clark shoot tip
30.3220.62
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GSE42550

Williams cotyledon stage 1 Williams cotyledon stage 2 Williams cotyledon stage 3 Williams cotyledon stage 4 Williams cotyledon stage 5 Williams cotyledon stage 6 Williams cotyledon stage 7
31.21, 36.6242.51, 39.639.7, 37.3149.21, 32.5828.48, 23.7917.58, 22.5121.7, 22.96
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GSE42871

Williams 43 100-200 mg seed cotyledon Williams 43 400-500 mg seed cotyledon Williams 43 5-6 mg seed cotyledonWilliams 43 5-6 mg seed seed coatWilliams 43 5-6 mg whole seed Williams 43 dry seed Williams 43 whole seed 12-14 DAF Williams 43 whole seed 22-24 DAF Williams 43 whole seed 4 DAF
19.5, 18.0119.22, 18.3236.8314.7439.27, 31.8158.31, 42.9228.54, 31.7224.49, 21.8722.15, 32.53
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GSE46096

Williams 82 Early Maturation Stage Axis Parenchyma Williams 82 Early Maturation Stage Axis Vasculature Williams 82 Early Maturation Stage Cotyledon Abaxial Epidermis Williams 82 Early Maturation Stage Cotyledon VasculatureWilliams 82 Early Maturation Stage EndospermWilliams 82 Early Maturation Stage Seed Coat Hilum Williams 82 Early Maturation Stage Seed Coat Hourglass Cells Williams 82 Early Maturation Stage Seed Coat Palisade Williams 82 Early Maturation Stage Seed Coat Parenchyma Williams 82 Early maturation stage embryonic axis SAM Williams 82 Early maturation stage embryonic axis epidermis Williams 82 Early maturation stage embryonic axis plumule Williams 82 Early maturation stage embryonic axis root tipWilliams 82 Early maturation stage embryonic axis stele Williams 82 Early maturation stage embryonic cotyledon abaxial parenchyma Williams 82 Early maturation stage embryonic cotyledon adaxial epidermis Williams 82 Early maturation stage embryonic cotyledon adaxial parenchyma
28, 21, 2519, 22, 2520, 14, 2719, 1615, 9, 2023, 24, 2223, 22, 1621, 15, 2029, 29, 1720, 23, 4727, 25, 2527, 24, 2417, 22, 2217, 24, 2329, 30, 1123, 23, 2023, 22, 16
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GSE49097

Hutchesen high vapor pressure deficitHutchesen low vapor pressure deficitPI 416937 high vapor pressure deficitPI 471938 high vapor pressure deficitPI 471938 low vapor pressure deficit
48.371, 32.42643.42837.57630.80441.272, 39.304
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GSE54903

Clark mutant seed coat Clark wild type seed coat Harsoy mutant seed coat Harsoy wild type seed coat
37.99, 32.82, 34.7634.23, 32.49, 37.3923.45, 22.2525, 25.18, 31.62
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GSE57252

Williams 82 Control Williams 82 dehydration 12hr Williams 82 dehydration 1hr Williams 82 dehydration 6hr Williams 82 saline 12hr Williams 82 saline 1hr Williams 82 saline 6hr
297.1, 293.32, 368.05305.38, 411.63, 389.03418.73, 368.94, 472.3380.21, 287.98, 391.35414.17, 458.58, 475.68369.4, 328.59, 341405.17, 347.37, 260.41
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GSE57349

Williams 82 Globular stage embryo Williams 82 Globular stage endosperm Williams 82 Globular stage seed coat endothelium Williams 82 Globular stage seed coat epidermis Williams 82 Globular stage seed coat hilum Williams 82 Globular stage seed coat inner integument Williams 82 Globular stage seed coat outer integument Williams 82 Globular stage suspensor
35.9094, 35.4207, 29.766537.2528, 35.9538, 35.355835.3603, 28.9465, 32.369326.4246, 31.5025, 19.275239.8168, 24.8335, 30.566522.0145, 48.4932, 27.4682, 26.027219.891, 26.8425, 27.824725.9351, 35.178, 32.8794
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GSE57350

Williams 82 Heart stage embryo Williams 82 Heart stage endosperm Williams 82 Heart stage seed coat endothelium Williams 82 Heart stage seed coat epidermis Williams 82 Heart stage seed coat hilum Williams 82 Heart stage seed coat inner integument Williams 82 Heart stage seed coat outer integument Williams 82 Heart stage suspensor
49.3885, 73.2046, 68.676970.7535, 70.7632, 51.864939.1365, 42.6573, 38.791327.1829, 39.8758, 30.995732.4072, 34.5412, 34.768433.7664, 34.6063, 39.36331.5314, 28.0124, 31.215987.3992, 68.8762, 81.2288
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GSE57606

Williams 82 Cotyledon stage embryo Williams 82 Cotyledon stage embryo axis Williams 82 Cotyledon stage embryo cotyledon Williams 82 Cotyledon stage endosperm Williams 82 Cotyledon stage seed coat endothelium Williams 82 Cotyledon stage seed coat epidermis Williams 82 Cotyledon stage seed coat hilum Williams 82 Cotyledon stage seed coat inner integument Williams 82 Cotyledon stage seed coat outer integument Williams 82 Cotyledon stage suspensor
40.9656, 36.5353, 46.877441.1574, 39.8325, 34.479236.3818, 31.1741, 37.724440.6739, 54.7832, 43.726833.9741, 29.2599, 35.118441.2309, 44.1496, 43.840137.2166, 37.5632, 29.786438.0816, 27.3093, 37.075733.9603, 25.8201, 41.973666.7688, 60.5552, 60.6472
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GSE61857

Williams 82 Cotyledon Stage1Williams 82 Cotyledon Stage2Williams 82 Cotyledon Stage3Williams 82 Leaf Stage1Williams 82 Leaf Stage3Williams 82 Leaf Stage5Williams 82 Leaf Stage7Williams 82 Leaf Stage8
8, 7, 86, 7, 77, 7, 76, 6, 66, 6, 66, 6, 66, 6, 66, 6, 6
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GSE67779

Wyandot resistant NIL 0 hr aphid exposureWyandot resistant NIL 24 hr aphid exposureWyandot resistant NIL 4 hr aphid exposureWyandot resistant NIL 48 hr aphid exposureWyandot resistant NIL 8 hr aphid exposureWyandot susceptible NIL 0 hr aphid exposureWyandot susceptible NIL 24 hr aphid exposureWyandot susceptible NIL 4 hr aphid exposureWyandot susceptible NIL 48 hr aphid exposureWyandot susceptible NIL 8 hr aphid exposure
632, 567344, 5071038, 193423, 325450, 1398925, 574835, 4421241, 548313, 343732, 663
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GDS3229

Soybean strain 2601RSoybean strain BayfieldSoybean strain MandarinSoybean strain PS46RSoybean strain S03W4
5, 8, 6, 6, 56, 6, 6, 7, 65, 7, 6, 7, 67, 7, 6, 6, 65, 6, 6, 6, 7
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GDS3230

pooled soybean leaves inoculated with HW94-1 harvested 12hourspooled soybean leaves inoculated with HW94-1 harvested 24 hourspooled soybean leaves inoculated with HW94-1 harvested 48 hourspooled soybean leaves inoculated with HW94-1 harvested 6 hourspooled soybean leaves inoculated with TW72-1 harvested 12 hourspooled soybean leaves inoculated with TW72-1 harvested 24 hourspooled soybean leaves inoculated with TW72-1 harvested 48 hourspooled soybean leaves inoculated with TW72-1 harvested 6 hourspooled soybean leaves mock- inoculated harvested time 0
10, 10, 1111, 1422, 19, 189, 9, 911, 10, 1112, 1421, 19, 209, 9, 912, 12, 12
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GDS3231

First trifoliolate leaf, 48h after sprayed with lipo-chitooligosaccharide (NOD factor)First trifoliolate leaf, 48h after sprayed with water control
8, 9, 98, 8, 9
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GDS3234

Glycine max rust inoculated leaf (Treatment)Glycine max uninoculated leaf (Control)
84.5636, 68.2459, 58.238375.5262, 68.3751, 75.848
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GDS3235

Asgrow A3237 early maturation-stage axis epidermis captured by LCMAsgrow A3237 early maturation-stage axis parenchyma captured by LCMAsgrow A3237 early maturation-stage axis plumule captured by LCMAsgrow A3237 early maturation-stage axis root meristem captured by LCMAsgrow A3237 early maturation-stage axis shoot meristem captured by LCMAsgrow A3237 early maturation-stage axis vascular bundle captured by LCMAsgrow A3237 early maturation-stage cotyledon abaxial epidermis captured by LCMAsgrow A3237 early maturation-stage cotyledon abaxial parenchyma captured by LCMAsgrow A3237 early maturation-stage cotyledon adaxial epidermis captured by LCMAsgrow A3237 early maturation-stage cotyledon adaxial parenchyma captured by LCMAsgrow A3237 early maturation-stage cotyledon vascular bundle captured by LCMAsgrow A3237 early maturation-stage seedAsgrow A3237 early maturation-stage seed coat aleurone captured by LCMAsgrow A3237 early maturation-stage seed coat hilum captured by LCMAsgrow A3237 early maturation-stage seed coat hourglass captured by LCMAsgrow A3237 early maturation-stage seed coat palisade captured by LCMAsgrow A3237 early maturation-stage seed coat parenchyma captured by LCM
141.7, 168.9104.4, 127.914.9, 140.643.1, 96.610.6, 42.680.6, 42.537.7, 181.2119.7, 116132, 72.5129.7, 149.8102.6, 148.2114.5, 195.1130.5, 112.1151.4, 79.275.7, 133.7139.4, 90.521, 18.5
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GDS3238

Asgrow A3237 globular stage embryo proper captured by LCMAsgrow A3237 globular stage endosperm captured by LCMAsgrow A3237 globular stage endothelium captured by LCMAsgrow A3237 globular stage epidermis captured by LCMAsgrow A3237 globular stage hilum captured by LCMAsgrow A3237 globular stage inner integument captured by LCMAsgrow A3237 globular stage outer integument captured by LCMAsgrow A3237 globular stage seedAsgrow A3237 globular stage suspensor captured by LCM
73.1, 104.4, 255.3184.6, 190, 198.3132.6, 177.2, 54.314.4, 22.9, 159.114.2, 169.6, 136.78, 90.1, 70.2100.4, 138.8, 42.962.6, 72.467.1, 36.3, 125.7
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GDS3239

Asgrow A3237 heart stage embryo proper captured by LCMAsgrow A3237 heart stage endosperm captured by LCMAsgrow A3237 heart stage endothelium captured by LCMAsgrow A3237 heart stage epidermis captured by LCMAsgrow A3237 heart stage hilum captured by LCMAsgrow A3237 heart stage inner integument captured by LCMAsgrow A3237 heart stage outer integument captured by LCMAsgrow A3237 heart stage seedAsgrow A3237 heart stage suspensor captured by LCMAsgrow A3237 leaf
61.1, 216.8, 134.728.2, 96.8, 234.8116.5, 19793.4, 190.5107.3, 204.67.1, 8550.9, 100.678.4, 9627.5, 269.3, 181.6114.1, 74.3
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GDS3241

Asgrow A3237 cotyledon stage embryo proper captured by LCMAsgrow A3237 cotyledon stage endosperm captured by LCMAsgrow A3237 cotyledon stage endothelium captured by LCMAsgrow A3237 cotyledon stage epidermis captured by LCMAsgrow A3237 cotyledon stage hilum captured by LCMAsgrow A3237 cotyledon stage inner integument captured by LCMAsgrow A3237 cotyledon stage outer integument captured by LCMAsgrow A3237 cotyledon stage seedAsgrow A3237 cotyledon stage suspensor captured by LCM
207.8, 127.876.7, 124215, 147.3212.2, 164.5124.1, 47.3131.5, 1226.5, 169.4108.5, 157.3100, 244.7
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GDS3242

Soybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar ATHOW - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar ATHOW - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar GENERAL - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar GENERAL - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar OX20-8 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar OX20-8 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar PI291327 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar PI291327 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar V710370 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar V710370 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar WILLIAMS - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar WILLIAMS - P.sojae Inoculated: 72 hours post inoculation
12, 11, 12, 1413, 13, 12, 1313, 13, 14, 1414, 14, 14, 1412, 12, 14, 1111, 12, 12, 1212, 13, 12, 1211, 14, 13, 1213, 12, 12, 1214, 12, 13, 1212, 12, 12, 1513, 15, 13, 1310, 10, 12, 1012, 13, 13, 1113, 13, 10, 1111, 11, 12, 1310, 11, 11, 1312, 13, 12, 1113, 14, 14, 1213, 15, 14, 1412, 14, 11, 1211, 12, 12, 1213, 14, 12, 1312, 13, 13, 1213, 12, 12, 1214, 12, 13, 1212, 12, 12, 1213, 13, 14, 1311, 11, 12, 1213, 13, 13, 1113, 13, 12, 1413, 14, 14, 12
Graph this experiment

GDS3244

Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation
14, 14, 13, 1315, 17, 16, 1314, 14, 15, 1314, 15, 14, 1412, 12, 13, 1214, 14, 14, 1415, 15, 15, 1612, 13, 13, 1513, 13, 14, 1213, 14, 14, 1513, 14, 12, 1415, 16, 15, 1615, 15, 16, 1516, 14, 13, 1514, 13, 13, 1314, 15, 14, 1415, 15, 14, 1412, 14, 13, 1212, 13, 13, 1314, 16, 13, 1513, 14, 13, 1313, 16, 15, 1614, 15, 15, 1614, 15, 13, 1413, 13, 15, 1314, 14, 13, 1315, 16, 14, 1715, 15, 14, 1313, 15, 14, 1612, 14, 12, 1514, 13, 13, 1213, 14, 16, 1512, 14, 13, 1312, 13, 13, 1314, 12, 13, 1313, 15, 13, 1214, 15, 16, 1411, 13, 15, 1412, 12, 11, 1313, 14, 14, 13
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GSE10251

Shoot apical meristem after one short-day treatmentVegetative shoot apical meristemshoot apical meristem from soybean subjected to 4 complete short-day cyclesshoot apical meristem from soybean under 4 complete short-day treatmentshoot apical meristem micro-dissected from 2 short-day treated soybean plantsshoot apical meristem micro-dissected from soybean plants after 6 short-day treatmentshoot apical meristem micro-dissected from soybean treated with 1 short-dayshoot apical meristems from 2 short-day treated soybeansoybean shoot apical meristem subjected to 6 complete short-day cyclessoybean shoot apical meristem, vegetative
49545.63951, 49, 494949435.64706, 50, 505.72226, 52, 525.53021, 46, 465.87905, 58, 58
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GSE10607

Microdissected shoot apical mersitemnon-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leavesnon-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leaves from 10-day-old soybean plantvegetative axillary meristem
41, 35382439, 36
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GSE10730

2nd trifoliate of iron deficient plant2nd trifoliate of iron sufficient plant
301, 264, 738, 234, 480797, 395, 144, 681, 657, 312
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GSE12286

Mature pollen grains from soybeanSporophytic tissues from soybean
32, 44, 3228, 49
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GSE12300

150mg cotyledon RNAiOle rep 3150mg nontransgenic soybean seed, rep2cotyledon soybeantransgenic 150mg cotyledon RNAi0le-2transgenic RNAiOle1transgenic RNAioleosin cotyledon bio rep 2 tech rep2
97.5382330.157331.509141.19275.05273.5919
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GSE12314

150 mg RNAi cotyledon with suppressed storage proteins150mg RNAiSP- cotyledon biol rep 1 tech rep1150mg RNAiSP- soybean cotyledon150mg cotyledon RNAiSP biol rep 2 tech rep 2150mg cotyledon, wt nontransgenic control150mg nontransgenic soybean cotyledon
343.768376.749386.525357.59887.634269.1286
Graph this experiment

GSE17883

root after 0.5h stressroot after 12h stressroot after 1h stressroot after 24h stressroot after 3h stressroot after 6h stressroot at 0h as control
128.84, 124.21158.02, 165.58124.86, 156.36130, 118.52153.83, 113.32122.39, 139.52141.55, 126.66
Graph this experiment

GSE18423

One centimeter long tap root tip of soybean genotype PI 416937One centimeter long tap root tip of soybean genotype PI 416937 treated with Al
82.1366, 97.8723, 90.8675, 84.5161, 82.7828, 83.4905, 90.6004, 94.0828, 83.7927, 84.8416, 86.945480.5309, 80.0491, 85.8747, 82.0115, 81.9491, 81.9254, 81.4844, 77.3443, 83.1168, 86.5224, 97.3315
Graph this experiment

GSE18517

One centimeter long tap root tip of soybean genotype PI 416937, Al, 12hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 2hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 48hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 72hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 12hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 2hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 48hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 72hrOne centimeter long tap root tip of soybean genotype Young, Al, 12hrOne centimeter long tap root tip of soybean genotype Young, Al, 2hrOne centimeter long tap root tip of soybean genotype Young, Al, 48hrOne centimeter long tap root tip of soybean genotype Young, Al, 72hrOne centimeter long tap root tip of soybean genotype Young, untreated, 12hrOne centimeter long tap root tip of soybean genotype Young, untreated, 2hrOne centimeter long tap root tip of soybean genotype Young, untreated, 48hrOne centimeter long tap root tip of soybean genotype Young, untreated, 72hr
106.057, 99.6791, 101.261100.183, 91.6871101.631, 100.631, 97.1921104.616, 109.944, 121.239105.07, 102.813, 104.1899.8918, 123.057107.258, 109.307, 120.057105.442, 106.881, 111.369103.193, 105.675, 104.171102.676, 113.988107.405, 131.641, 110.732107.986, 103.592, 104.14299.9617, 113.733, 102.366104.436, 102.366109.624, 112.89, 121.158104.94, 117.914, 115.269
Graph this experiment

GSE18518

One centimeter long root tip of soybean genotype PI 416937, Al + Mg, 12hrOne centimeter long root tip of soybean genotype PI 416937, Al + Mg, 72hrOne centimeter long root tip of soybean genotype PI 416937, Al, 12hrOne centimeter long root tip of soybean genotype PI 416937, Al, 72hrOne centimeter long root tip of soybean genotype Young, Al + Mg, 12hrOne centimeter long root tip of soybean genotype Young, Al + Mg, 72hrOne centimeter long root tip of soybean genotype Young, Al, 12hrOne centimeter long root tip of soybean genotype Young, Al, 72hr
65.7344, 69.447, 67.129183.0845, 89.2866, 71.101368.5194, 66.962, 65.722467.269, 67.2244, 66.57863.8713, 66.5451, 67.529766.9721, 66.2215, 72.527771.6135, 73.3886, 66.170465.6174, 65.4033, 66.8726
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GSE18822

Soybean leafSoybean noduleSoybean root
33.86, 34.98, 32.8635.22, 44.1, 42.5335.79, 35.07, 35.53
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GSE18827

entrained soybean seed 24h lightentrained soybean seed 28h lightentrained soybean seed 32h lightentrained soybean seed 36h lightentrained soybean seed 40h lightentrained soybean seed 44h lightentrained soybean seed 48h lightentrained soybean seed 52h lightentrained soybean seed 56h lightentrained soybean seed 60h lightentrained soybean seed 64h lightentrained soybean seed 68h lightentrained soybean seed 72h light
6, 75, 95, 88, 97, 86, 86, 76, 85, 95, 119, 55, 99, 6
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GSE20972

Soybean trifoliates harvested 48 h after foliar spray with LCOSoybean trifoliates harvested 48 h after foliar spray with distilled waterSoybean trifoliates harvested immediately after foliar spray with LCOSoybean trifoliates harvested immediately after foliar spray with distilled water
8, 7, 78, 9, 87, 8, 88, 8, 8
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GSE22158

soybean seed green and fully grownsoybean seed when the bean's length is 5mm
23.3058, 34.13068.07933, 3.23163
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GSE22227

Clark 10 day roots, Fe limitedClark 10 day roots, Fe sufficientClark 14 day roots, Fe recoveryClark 14 day roots, Fe sufficientIsoClark 10 day roots, Fe limitedIsoClark 10 day roots, Fe sufficientIsoClark 14 day roots, Fe recoveryIsoClark 14 day roots, Fe sustained
70, 63, 7170, 81, 7154, 55, 5250, 53, 4871, 70, 6970, 69, 7061, 56, 5649, 48, 52
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GSE23128

palisade mesophyll parenchyma cellsparaveinal mesophyll cells
39.8321, 62.2772, 53.9282109.389, 14.0358, 27.6478
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GSE23129

mature leaf 30 day controlmature leaf day 0 controlmature leaf day 15 controlmature leaf day 15 de-tipped leafletmature leaf day 20 controlmature leaf detip-retip 20 daymature leaf detip-retip 30 daymmature leaf detip-retip 20 day
29.1387, 44.4291, 47.19485.46668, 22.4767, 19.7973, 52.052637.9163, 29.7359, 52.263219.4191, 37.1639, 49.849251.5232, 44.0623, 42.411224.7439, 50.184116.8161, 41.7583, 57.310325.2357
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GSE24145

root hair cells, inoculated, 12 hrroot hair cells, inoculated, 18 hrroot hair cells, inoculated, 24 hrroot hair cells, inoculated, 36 hrroot hair cells, inoculated, 48 hrroot hair cells, inoculated, 6 hrroot hair cells, mock, 12 hrroot hair cells, mock, 18 hrroot hair cells, mock, 24 hrroot hair cells, mock, 36 hrroot hair cells, mock, 48 hrroot hair cells, mock, 6 hr
14, 17, 13, 1114, 12, 11, 1212, 11, 910, 15, 1113, 12, 1515, 14, 12, 1213, 12, 12, 1210, 12, 13, 1215, 12, 1014, 12, 911, 15, 1213, 13, 11, 10
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GSE26198

Glycine max leaf, 20% inhibitionGlycine max leaf, 30% inhibitionGlycine max leaf, baselineGlycine max leaf, optimum
235.196, 177.408, 277.395, 244.856204.009, 264.063, 224.109, 267.044362.817, 92.9013, 220.193, 212.189237.623, 219.273, 292.704, 388.409
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GSE26208

Black soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed developmentBrown soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed development
8, 8, 88, 7, 9
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GSE26443

2mm pod with seed5mm soybean seedFully grown green seedPod at Pod elongation stage
47.0497, 24.146328.4924, 14.571923.8055, 19.037914.9709, 17.0437
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GSE27894

0.5 mm root tipnon-meristematic tissues
23.2, 15.4, 12.659, 29.6
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GSE29653

GmMPK4-silenced Williams 82 trifoliolate leaves, petioles and stem segmentsWilliams 82 trifoliolate leaves, petioles and stem segments
82.91, 78.36, 82.295, 73.570.466, 90.033, 70.003, 112.29
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GSE29740

leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 12 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 144 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 216 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 24 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 288 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 72 hai)leaf (pathogen isolates: Mock - time: 12 hai)leaf (pathogen isolates: Mock - time: 144 hai)leaf (pathogen isolates: Mock - time: 216 hai)leaf (pathogen isolates: Mock - time: 24 hai)leaf (pathogen isolates: Mock - time: 288 hai)leaf (pathogen isolates: Mock - time: 72 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 12 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 144 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 216 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 24 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 288 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 72 hai)
11.589, 21.815, 72.4325.715, 55.985, 70.01741.993, 71.595, 60.86672.277, 74.855, 82.78846.267, 53.65, 69.87895.075, 92.006, 73.36365.424, 21.341, 66.82972.812, 94.653, 77.24455.15, 89.432, 67.47368.375, 28.915, 94.11195.271, 87.557, 74.65337.363, 36.847, 81.24628.675, 13.668, 85.31350.312, 42.631, 42.45447.162, 74.116, 59.27475.491, 72.613, 86.09564.994, 35.023, 36.6646.117, 44.4, 67.748
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GSE29741

leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 12 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 144 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 216 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 24 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 288 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 72 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 12 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 144 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 216 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 24 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 288 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 72 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 12 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 144 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 216 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 24 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 288 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 72 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 12 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 144 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 216 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 24 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 288 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 72 hai)leaf (genotype:Williams 82 - pathogen inoculation: Mock - time: 216 hai)
43.637, 50.701, 62.71694.552, 83.028, 47.34325.308, 47.525, 22.76857.845, 48.532, 41.2641.593, 98.9, 56.01570.669, 113.95, 55.82239.22, 43.113, 49.38629.507, 48.385, 74.2578.248, 40.249, 70.531135.24, 41.857, 26.1661.404, 101.14, 58.81564.198, 66.89, 52.38353.27, 25.087, 68.88951.78, 24.562, 22.56355.049, 83.573, 115.04115.09, 80.34, 58.97446.815, 97.639, 66.45273.571, 100.53, 73.49142.311, 53.244, 30.53577.008, 87.353, 41.46585.179, 44.16771.099, 37.621, 86.69378.581, 61.834, 51.72770.546, 64.508, 97.6589.823
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GSE30112

msh1 RNAi stunted linemsh1 RNAi variegated linewild type
36, 30, 3341, 42, 4242, 41, 40, 38
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GSE33408

HiProt seed 100-200 mgHiProt seed 200-300 mgHiProt seed 25-50 mgHiProt seed 50-100 mgLoProt seed 100-200 mgLoProt seed 200-300 mgLoProt seed 25-50 mgLoProt seed 50-100 mg
86.315, 89.288, 54.67959.828, 90.497, 120.2872.721, 70.224, 56.08855.506, 55.069, 51.98985.557, 94.387, 145.6268.746, 91.376, 84.95961.314, 50.69, 71.10757.329, 73.653, 28.859
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GSE33410

Embrapa48 Leaf 12 HAI ASR infectionEmbrapa48 Leaf 12 HAI mock infectionEmbrapa48 Leaf 120 HAI ASR infectionEmbrapa48 Leaf 120 HAI mock infectionEmbrapa48 Leaf 168 HAI ASR infectionEmbrapa48 Leaf 168 HAI mock infectionEmbrapa48 Leaf 18 HAI ASR infectionEmbrapa48 Leaf 18 HAI mock infectionEmbrapa48 Leaf 24 HAI ASR infectionEmbrapa48 Leaf 24 HAI mock infectionEmbrapa48 Leaf 36 HAI ASR infectionEmbrapa48 Leaf 36 HAI mock infectionEmbrapa48 Leaf 48 HAI ASR infectionEmbrapa48 Leaf 48 HAI mock infectionEmbrapa48 Leaf 6 HAI ASR infectionEmbrapa48 Leaf 6 HAI mock infectionEmbrapa48 Leaf 72 HAI ASR infectionEmbrapa48 Leaf 72 HAI mock infectionEmbrapa48 Leaf 96 HAI ASR infectionEmbrapa48 Leaf 96 HAI mock infectionPI 230970 Leaf 12 HAI ASR infectionPI 230970 Leaf 12 HAI mock infectionPI 230970 Leaf 120 HAI ASR infectionPI 230970 Leaf 120 HAI mock infectionPI 230970 Leaf 168 HAI ASR infectionPI 230970 Leaf 168 HAI mock infectionPI 230970 Leaf 18 HAI ASR infectionPI 230970 Leaf 18 HAI mock infectionPI 230970 Leaf 24 HAI ASR infectionPI 230970 Leaf 24 HAI mock infectionPI 230970 Leaf 36 HAI ASR infectionPI 230970 Leaf 36 HAI mock infectionPI 230970 Leaf 48 HAI ASR infectionPI 230970 Leaf 48 HAI mock infectionPI 230970 Leaf 6 HAI ASR infectionPI 230970 Leaf 6 HAI mock infectionPI 230970 Leaf 72 HAI ASR infectionPI 230970 Leaf 72 HAI mock infectionPI 230970 Leaf 96 HAI ASR infectionPI 230970 Leaf 96 HAI mock infection
64.331, 40.797, 67.13359.415, 23.336, 69.30650.554, 67.085, 76.03437.449, 58.237, 65.92553.544, 45.574, 28.53665.267, 70.479, 82.586108.74, 161.33, 84.77676.291, 79.274, 84.749.071, 53.726, 34.23236.412, 45.704, 33.96747.944, 41.502, 70.42618.676, 58.531, 24.66342.047, 51.934, 86.64637.089, 41.94, 46.23543.619, 68.577, 23.97516.455, 26.917, 34.97338.771, 39.02, 49.52554.841, 20.621, 18.81836.691, 63.793, 48.80971.428, 63.212, 38.94913.55, 40.552, 70.055104.19, 59.819, 43.50467.839, 81.373, 66.85660.403, 98.998, 54.44649.51, 23.603, 39.741100.1, 50.654, 49.51594.678, 117.83, 121.9885.757, 85.748, 116.2144.661, 68.872, 76.17441.814, 58.232, 33.19229.405, 33.51, 40.52247.276, 56.574, 58.00166.937, 76.087, 68.78675.394, 102.07, 74.28559.855, 27.753, 14.63834.239, 42.738, 64.75844.181, 52.201, 61.53360.602, 81.572, 53.47147.146, 42.698, 62.2756.075, 42.068, 38.897
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GSE35427

LD05-16060 resistant Leaf day1 aphidsLD05-16060 resistant Leaf day1 controlLD05-16060 resistant Leaf day7 aphidsLD05-16060 resistant Leaf day7 controlLD05-16060 resistant leaf day1 controlSD01-76 susceptible Leaf day7 controlSD01-76 susceptible leaf day7 controlSD01-76R susceptible Leaf day1 aphidsSD01-76R susceptible Leaf day1 controlSD01-76R susceptible Leaf day7 aphids
110, 128, 78106, 13989, 111, 131143, 168, 1091117189, 9478, 97, 6075, 120, 7084, 111, 133
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GSE41125

14 day salinity stressed seedlings14 day seedlings mock stressed
4468
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GSE41724

BPMV treated trifoliolate leaves, petioles and stem segmentsBPMV-LRR treated trifoliolate leaves, petioles and stem segments
117.36, 133.52, 168.06127.1, 68.407
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Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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