Glyma.10g241000

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Report for Sequence Feature Glyma.10g241000

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46938908
stop:	46948308
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g241000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51820.1	AT	phosphoglucomutase	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0005978	GO-bp	glycogen biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006006	GO-bp	glucose metabolic process	EnsemblGenomes	N/A	IEA
GO:0009590	GO-bp	detection of gravity	EnsemblGenomes	N/A	IEA
GO:0019252	GO-bp	starch biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0019388	GO-bp	galactose catabolic process	EnsemblGenomes	N/A	IEA
GO:0071704	GO-bp	organic substance metabolic process	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0009570	GO-cc	chloroplast stroma	EnsemblGenomes	N/A	IEA
GO:0010319	GO-cc	stromule	EnsemblGenomes	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0004614	GO-mf	phosphoglucomutase activity	EnsemblGenomes	N/A	IEA
GO:0016868	GO-mf	intramolecular transferase activity, phosphotransferases	EnsemblGenomes	N/A	IEA
GO:0016868	GO-mf	intramolecular transferase activity, phosphotransferases	JGI	N/A	IEA
KOG0625	KOG	Phosphoglucomutase	JGI	N/A	IEA
PTHR22573	Panther	PHOSPHOHEXOMUTASE FAMILY MEMBER	JGI	N/A	IEA
PTHR22573:SF5	Panther		JGI	N/A	IEA
PF00408	PFAM	Phosphoglucomutase/phosphomannomutase, C-terminal domain	JGI	N/A	IEA
PF02878	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	JGI	N/A	IEA
PF02879	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	JGI	N/A	IEA
PF02880	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	JGI	N/A	IEA
GLUCOSE1PMETAB-PWY	SoyCyc9	glucose and glucose-1-phosphate degradation	Plant Metabolic Network		ISS
PWY-3801	SoyCyc9	sucrose degradation II (sucrose synthase)	Plant Metabolic Network		ISS
PWY-5661	SoyCyc9	GDP-glucose biosynthesis	Plant Metabolic Network		ISS
PWY-622	SoyCyc9	starch biosynthesis	Plant Metabolic Network		ISS
PWY-6317	SoyCyc9	D-galactose degradation I (Leloir pathway)	Plant Metabolic Network		ISS
PWY-7238	SoyCyc9	sucrose biosynthesis II	Plant Metabolic Network		ISS
PWY-7343	SoyCyc9	UDP-α-D-glucose biosynthesis I	Plant Metabolic Network		ISS
PWY-7345	SoyCyc9	superpathway of anaerobic sucrose degradation	Plant Metabolic Network		ISS
PWYQT-4466	SoyCyc9	superpathway of sucrose and starch metabolism I (non-photosynthetic tissue)	Plant Metabolic Network		ISS
SUCSYN-PWY	SoyCyc9	sucrose biosynthesis I (from photosynthesis)	Plant Metabolic Network		ISS
GN7V-50206	SoyCyc9-rxn	phosphoglucomutase (glucose-cofactor)	Plant Metabolic Network		ISS

Proteins Associated with Glyma.10g241000

Locus	Gene Symbol	Protein Name
	PGM3	phosphoglucomutase 3 gene

Expression Patterns of Glyma.10g241000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g241000

Paralog	Evidence	Comments
Glyma.20g153600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g241000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g38590	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.10g241000

Limit To All Plant Sequences

>Glyma.10g241000.1 sequence-type=CDS polypeptide=Glyma.10g241000.1.p locus=Glyma.10g241000 ID=Glyma.10g241000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTCTTGTAAACTTGACAGCTTCATTCTCTCTGCCTATAAACCCCAAAACTCCATTCTCCCACTTTCAATCCAACCTTCCTCCTTCCTTCCATCTCCTTCTTCTTTGAAGCCTCAGAAGCTTCCCTTCAGAATTCGCTATGGTTCTACCATCAGAGCCACGTCATCATCCTCAACCCCTTCCGCAACCATTGCCGAACCTGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATTGATGGACAAAAGACTGGAACCAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTATGCAAGACAATTACCTTGCAAATTGGATCCAGGCTCTGTTTAATTCATTGCCACCGGAGGACTACAAGAATGGTTTGTTGGTGTTGGGAGGTGATGGTCGATACTTTAATCAGGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGATCTCTGAGATAAAGATAGCTGACATTCCTGATGTTGATTTATCAAAAGTTGGGGTTACAAATTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTTTCTGACTATCTGGAGCTATTGGAGACAGTATTTGATTTTCAGCTAATCAGAGGTCTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTCGTTGATAAACTCGGTGCTAGTCTGGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATATGCGAAGGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCCGTTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGATCACATTCGTGAGAAAGATGGCATCTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAATCCCGGGGAGAAATTGATCTCCGTATCTGACGTTGTGATGGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCAGGAACTGGTTCTGCAGGGGCTACGGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCGTGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTCATCACATAA

Predicted protein sequences of Glyma.10g241000

Limit To All Plant Sequences

>Glyma.10g241000.1.p sequence-type=predicted peptide transcript=Glyma.10g241000.1 locus=Glyma.10g241000 ID=Glyma.10g241000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSCKLDSFILSAYKPQNSILPLSIQPSSFLPSPSSLKPQKLPFRIRYGSTIRATSSSSTPSATIAEPEGIKIKSIPTKPIDGQKTGTSGLRKKVKVFMQDNYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNQEAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVDLSKVGVTNFGSFSVEVIDPVSDYLELLETVFDFQLIRGLLSRPDFRFIFDAMHAVTGAYAKPIFVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAREAIPYFKNGVKGLARSMPTSGALDRVAKKLNLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKNPGEKLISVSDVVMEHWATYGRNFFSRYDYEECESEGANKMIEYLRDILSKSKPGDQYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLAISVSKLKDFTGREKPTVIT*

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