Glyma.08g050100

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Report for Sequence Feature Glyma.08g050100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3930000
stop:	3934272
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g050100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18190.1	AT	TCP-1/cpn60 chaperonin family protein	JGI	N/A	IEA
GO:0006457	GO-bp	protein folding	EnsemblGenomes	N/A	IEA
GO:0006458	GO-bp	'de novo' protein folding	EnsemblGenomes	N/A	IEA
GO:0044267	GO-bp	cellular protein metabolic process	JGI	N/A	IEA
GO:0061077	GO-bp	chaperone-mediated protein folding	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005832	GO-cc	chaperonin-containing T-complex	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0044183	GO-mf	protein binding involved in protein folding	EnsemblGenomes	N/A	IEA
GO:0051082	GO-mf	unfolded protein binding	EnsemblGenomes	N/A	IEA
KOG0358	KOG	Chaperonin complex component, TCP-1 delta subunit (CCT4)	JGI	N/A	IEA
PTHR11353	Panther	CHAPERONIN	JGI	N/A	IEA
PTHR11353:SF26	Panther	T-COMPLEX PROTEIN 1 SUBUNIT DELTA	JGI	N/A	IEA
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI	N/A	IEA

Proteins Associated with Glyma.08g050100

Locus	Gene Symbol	Protein Name
	CCT-D	cytosolic chaperonin

Expression Patterns of Glyma.08g050100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g050100

Paralog	Evidence	Comments
Glyma.05g242700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g050100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g05470	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.08g050100

Limit To All Plant Sequences

>Glyma.08g050100.1 sequence-type=CDS polypeptide=Glyma.08g050100.1.p locus=Glyma.08g050100 ID=Glyma.08g050100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGCAATCGCGGCTCCCCAACACAGATCCTCGAAGACAGAGTCCTACGTGGACAATAAGCGCAAGGAGGATATCCGCCATGCCAACATCGTGGCCGCACGCTCAGTCGCCAACGCGGTTCGCACCAGTCTGGGCCCTAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACTCCGCCGCCGGCGACGGCACCACCACCGTCGTCGTCATCGCTGGCGCCCTCCTCGAGCAGTGCCTCCTCCTCCTTTCCCACGGCATCCACCCCACCGTCGTCTCCGACGCCCTCCACAAGGCTGCCGTCAAGGCCGTCGACGTTCTCACCGCCATGGCCGTCCCCGTCGAACTCTCCGACCGCGACTCCCTCGTGAAGTCCGCCAGCACTTCCCTCAACAGCAAGGTCGTCAGCCAATACTCCACGCTCCTCGCTCCCCTCGCCGTCGACGCCGTTCTCTCCGTCGTGGATGCCCCCAAGCCCGACATGGTCGATCTCCGCGATGTCAAGATCGTGAAGAAACTCGGCGGCACCGTCGACGACACCGAGCTCGTGAAAGGTCTCGTCTTTGACAAGAAGGTCAGCCACGCCGCCGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATTCAATTCCAGATTTCGCCGCCCAAAACCGACATCGAACAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTCTAAAAGAAGAGCGTAGTTATATTCTCAGCATGATTAAGAAGATCAAGGCCACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCGGTTACTGATTTGTCCTTGCATTACCTTGCAAAAGCTAAGATTTTGGTCATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACCAAGACACTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCACTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGTTTTCTCTTGGGGATGGGAAGATTGTGAAGATTACTGGTATTAAGGAGATGGGGAAGACCACCACTGTGCTTGTACGTGGGTCTAATCAGCTTGTGCTCGATGAGGCTGAGCGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCCGGCGGTGGTGCCCCTGAGATTGAGCTCTCCAGGCAGCTGGGTGCCTGGGCTAAGGTGTTGCATGGGATGGAGGGTTACTGTGTGAGGGCATTCGCTGAGGCGCTTGAAGTTATTCCCTATACTCTGGCTGAAAATGCTGGTTTGAACCCGATTGCCATTGTTACTGAGCTAAGGAATCGTCATGCACAGGGTGAGATAAATGCTGGAATAAATGTAAGGAAGGGGCAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCCCTGCTTGTGAGCACCAGTGCGATCACCTTGGCGACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Predicted protein sequences of Glyma.08g050100

Limit To All Plant Sequences

>Glyma.08g050100.1.p sequence-type=predicted peptide transcript=Glyma.08g050100.1 locus=Glyma.08g050100 ID=Glyma.08g050100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAIAAPQHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTVVSDALHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAPKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILSMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRTEKLGYADLVEEFSLGDGKIVKITGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR*

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