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GWAS Report for Seeds per plant 2

Experimental Details

Number of germplasm analyzed	219
Number of loci tested	1,142
Platform name	Illumina GoldenGate

Publication for This Experiment

Genetic dissection of the relationship between plant architecture and yield component traits in soybean (Glycine max) by association analysis across multiple environments
(Zhang et al. 2015a)

Pla. Breed. 2015, 135(5):564-572
doi:10.1111/pbr.12305

Supplemental data for the GWAS QTL
candidate genes, gene annotations, prev. reported QTLs

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001616
TO	TO:0000905

Other traits reported in this paper

• Branch number, main stem 1
• Stem diameter, main 1
• Plant height 2
• Seed weight 2
• Seed yield 2
• Pod number 2

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Candidate gene	Chromosome	Linkage Group
Seeds per plant 2-g1	TS	ss107916660	0.065604	0.000265		Gm15	E
Seeds per plant 2-g2	TS	ss107917367	0.09132	1.51E-08		Gm11	B1
Seeds per plant 2-g3	TS	ss107918865	0.087323	1.11E-05	Glyma.06g220500	Gm06	C2
Seeds per plant 2-g4	TS	ss107919771	0.069836	0.1078	Glyma.02g155600	Gm02	D1b
Seeds per plant 2-g5	TS	ss107918968	0.068098	0.7796	Glyma.04g005400	Gm04	C1

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