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GWAS Report for Seed weight 2

Experimental Details

Number of germplasm analyzed	219
Number of loci tested	1,142
Platform name	Illumina GoldenGate

Publication for This Experiment

Genetic dissection of the relationship between plant architecture and yield component traits in soybean (Glycine max) by association analysis across multiple environments
(Zhang et al. 2015a)

Pla. Breed. 2015, 135(5):564-572
doi:10.1111/pbr.12305

Supplemental data for the GWAS QTL
candidate genes, gene annotations, prev. reported QTLs

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001629
PO	PO:0009010
TO	TO:0000181

Other traits reported in this paper

• Branch number, main stem 1
• Stem diameter, main 1
• Plant height 2
• Seed yield 2
• Pod number 2
• Seeds per plant 2

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	p-value	Candidate gene	Chromosome	Linkage Group
Seed weight 2-g1	SW	ss107913198	0.071048	0.000716	Glyma.09g256800	Gm09	K
Seed weight 2-g2	SW	ss107913562	0.072943	0.0189	Glyma.03g166700	Gm03	N
Seed weight 2-g3	SW	ss107913815	0.061957	2.89E-10	Glyma.11g164700	Gm11	B1
Seed weight 2-g4	SW	ss107913806	0.061957	2.89E-10	Glyma.11g164700	Gm11	B1

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